Variant report

Variant	rs10141048
Chromosome Location	chr14:105798547-105798548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr14:105798464-105798671	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:105795771..105798760-chr14:105803162..105807544,4	K562	blood:
2	chr14:105781134..105783040-chr14:105798283..105800326,3	MCF-7	breast:
3	chr14:105792149..105794146-chr14:105797641..105799922,2	MCF-7	breast:
4	chr14:105798156..105801052-chr14:105809426..105811006,2	MCF-7	breast:

Variant related genes	Relation type
PACS2	TF binding region
ENSG00000179364	Chromatin interaction
ENSG00000185024	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10132353	1.00[JPT][hapmap]
rs10132438	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141334	1.00[JPT][hapmap]
rs10142682	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143232	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147378	1.00[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147674	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10148379	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148455	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11846567	1.00[JPT][hapmap]
rs11847128	1.00[JPT][hapmap]
rs11847153	1.00[ASN][1000 genomes]
rs11849421	1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101178	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28378394	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28545538	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28569215	1.00[ASN][1000 genomes]
rs4074004	1.00[JPT][hapmap]
rs4076933	1.00[JPT][hapmap]
rs4983411	1.00[JPT][hapmap]
rs57000673	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229884	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58816330	0.83[ASN][1000 genomes]
rs59143495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60545468	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576084	0.83[ASN][1000 genomes]
rs7144362	1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161158	1.00[JPT][hapmap]
rs73357391	1.00[ASN][1000 genomes]
rs73359015	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73359017	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73359022	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73359031	0.83[AFR][1000 genomes]
rs73359035	1.00[ASN][1000 genomes]
rs73359049	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004328	1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs8008801	1.00[JPT][hapmap]
rs8010649	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8010888	1.00[JPT][hapmap]
rs8016693	1.00[JPT][hapmap]
rs8021520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671295	1.00[JPT][hapmap]
rs9671782	0.83[ASN][1000 genomes]
rs9671890	1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
8	esv2758369	chr14:105513346-105803170	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	esv2760014	chr14:105513346-105803170	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv902441	chr14:105602619-105803170	Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv902442	chr14:105602619-105803170	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv1817919	chr14:105605199-105803170	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
14	nsv902466	chr14:105704465-105803170	Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
15	esv29986	chr14:105707292-105803170	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv832887	chr14:105717339-105803170	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
17	nsv832888	chr14:105717339-105803170	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105782600-105800000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:105782600-105807400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:105783600-105799800	Weak transcription	Stomach Mucosa	stomach
4	chr14:105783600-105802800	Weak transcription	Fetal Intestine Large	intestine
5	chr14:105784000-105821800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr14:105784200-105802400	Weak transcription	Dnd41	blood
7	chr14:105784400-105799400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:105789200-105805600	Enhancers	Brain Anterior Caudate	brain
9	chr14:105790000-105802200	Enhancers	Brain Hippocampus Middle	brain
10	chr14:105790200-105805400	Enhancers	Brain Substantia Nigra	brain
11	chr14:105791000-105803400	Enhancers	Fetal Muscle Leg	muscle
12	chr14:105791400-105804200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:105791600-105798800	Strong transcription	Fetal Intestine Small	intestine
14	chr14:105791800-105803600	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:105792400-105804200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:105792800-105798800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr14:105793400-105804400	Weak transcription	Fetal Lung	lung
18	chr14:105793600-105800000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:105793800-105821000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:105794400-105801000	Weak transcription	Fetal Brain Male	brain
21	chr14:105794600-105801000	Enhancers	Lung	lung
22	chr14:105794600-105801800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr14:105794800-105799200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr14:105794800-105799800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr14:105794800-105800200	Weak transcription	Fetal Brain Female	brain
26	chr14:105794800-105801000	Enhancers	Adipose Nuclei	Adipose
27	chr14:105795000-105798800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr14:105795000-105800000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr14:105795200-105799600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:105795200-105799800	Enhancers	Spleen	Spleen
31	chr14:105795400-105799000	Weak transcription	Fetal Heart	heart
32	chr14:105795600-105798600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr14:105795600-105798800	Enhancers	Primary T cells from cord blood	blood
34	chr14:105795600-105800000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:105795800-105798600	Weak transcription	Brain Angular Gyrus	brain
36	chr14:105795800-105799200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr14:105796000-105799000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:105796000-105799800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr14:105796200-105798600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:105796600-105798600	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr14:105796600-105799000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr14:105797000-105799400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr14:105797000-105806800	Weak transcription	Aorta	Aorta
44	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr14:105797200-105798800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:105797200-105798800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr14:105797200-105799400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:105797200-105799400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr14:105797200-105799400	Weak transcription	Liver	Liver
50	chr14:105797200-105799400	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links