Variant report

Variant	rs59143495
Chromosome Location	chr14:105803476-105803477
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105795771..105798760-chr14:105803162..105807544,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10132438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135362	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142682	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147674	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10148379	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148455	1.00[ASN][1000 genomes]
rs11847153	1.00[ASN][1000 genomes]
rs11849421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101178	1.00[ASN][1000 genomes]
rs28378394	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28545538	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28569215	1.00[ASN][1000 genomes]
rs57000673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229884	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58816330	0.83[ASN][1000 genomes]
rs60545468	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576084	0.83[ASN][1000 genomes]
rs7144362	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357391	1.00[ASN][1000 genomes]
rs73359015	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73359017	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73359022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73359031	0.81[AFR][1000 genomes]
rs73359035	1.00[ASN][1000 genomes]
rs73359049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004328	0.90[AFR][1000 genomes]
rs8010649	1.00[ASN][1000 genomes]
rs8021520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671782	0.83[ASN][1000 genomes]
rs9671890	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105782600-105807400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:105784000-105821800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:105789200-105805600	Enhancers	Brain Anterior Caudate	brain
4	chr14:105790200-105805400	Enhancers	Brain Substantia Nigra	brain
5	chr14:105791400-105804200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:105791800-105803600	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:105792400-105804200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:105793400-105804400	Weak transcription	Fetal Lung	lung
9	chr14:105793800-105821000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:105797000-105806800	Weak transcription	Aorta	Aorta
11	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:105797200-105804000	Weak transcription	Colonic Mucosa	Colon
13	chr14:105797200-105804200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr14:105797200-105804200	Weak transcription	NHEK	skin
15	chr14:105797200-105804400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:105797200-105804600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:105797200-105806600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:105797200-105810600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:105797200-105820800	Weak transcription	NHLF	lung
20	chr14:105797400-105807000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:105797400-105807000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:105797400-105812000	Weak transcription	K562	blood
23	chr14:105797400-105821200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr14:105798200-105803800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:105798200-105818400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:105798400-105805400	Enhancers	Left Ventricle	heart
27	chr14:105798400-105805600	Enhancers	Right Ventricle	heart
28	chr14:105798400-105809400	Weak transcription	HepG2	liver
29	chr14:105798600-105805200	Enhancers	Pancreas	Pancrea
30	chr14:105798800-105803800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr14:105798800-105803800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr14:105798800-105804400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:105798800-105807000	Weak transcription	Primary T cells from cord blood	blood
34	chr14:105799000-105806800	Weak transcription	Fetal Thymus	thymus
35	chr14:105799000-105807200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:105799000-105809400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:105799000-105822200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:105799200-105803600	Weak transcription	Placenta	Placenta
39	chr14:105799600-105805600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:105799600-105814800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr14:105799600-105816000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr14:105799800-105830800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr14:105800000-105803800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:105800000-105804800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:105800200-105818200	Weak transcription	Stomach Mucosa	stomach
46	chr14:105800600-105804400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:105800800-105818000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr14:105801200-105804200	Genic enhancers	Esophagus	oesophagus
49	chr14:105801400-105805400	Enhancers	Ovary	ovary
50	chr14:105801600-105804000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links