Variant report

Variant	rs11621365
Chromosome Location	chr14:105871769-105871770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105870531..105872193-chr14:105947372..105949251,2	MCF-7	breast:
2	chr14:105870344..105872105-chr14:105885926..105888778,2	K562	blood:
3	chr14:105869640..105871793-chr14:105875645..105878408,2	K562	blood:

Variant related genes	Relation type
ENSG00000182979	Chromatin interaction
ENSG00000251602	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10147154	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11845995	1.00[CHD][hapmap]
rs12435295	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28529463	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28541433	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4074001	1.00[CHD][hapmap];0.80[LWK][hapmap]
rs4983407	1.00[CHD][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap]
rs4983414	1.00[CHD][hapmap]
rs4983418	1.00[CHD][hapmap]
rs4983613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4983614	0.94[ASW][hapmap];1.00[CHD][hapmap];0.92[LWK][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6576085	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576086	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576088	0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6576099	1.00[CHD][hapmap]
rs7149988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153174	1.00[CHD][hapmap]
rs7161158	1.00[CHD][hapmap]
rs73361094	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7492842	0.83[AMR][1000 genomes]
rs8005552	1.00[CHD][hapmap]
rs8014777	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9743822	1.00[CHD][hapmap];0.86[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105865600-105875000	Weak transcription	Fetal Kidney	kidney
2	chr14:105866200-105875000	Weak transcription	Brain Anterior Caudate	brain
3	chr14:105866400-105877400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:105866600-105877200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:105866600-105877400	Weak transcription	Brain Angular Gyrus	brain
6	chr14:105866800-105877400	Weak transcription	Psoas Muscle	Psoas
7	chr14:105867000-105877200	Weak transcription	Pancreas	Pancrea
8	chr14:105867000-105877200	Weak transcription	Right Ventricle	heart
9	chr14:105867000-105877400	Weak transcription	Left Ventricle	heart
10	chr14:105867200-105877400	Weak transcription	HSMM	muscle
11	chr14:105867600-105872000	Weak transcription	Dnd41	blood
12	chr14:105867600-105872200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr14:105867600-105873200	Weak transcription	Brain Substantia Nigra	brain
14	chr14:105867600-105875200	Weak transcription	Brain Germinal Matrix	brain
15	chr14:105867600-105875200	Weak transcription	NHLF	lung
16	chr14:105867600-105875400	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:105867600-105875400	Weak transcription	Fetal Brain Female	brain
18	chr14:105867600-105875600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:105867600-105876800	Weak transcription	Gastric	stomach
20	chr14:105867600-105877000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr14:105867600-105877000	Weak transcription	Ovary	ovary
22	chr14:105867600-105877000	Weak transcription	Hela-S3	cervix
23	chr14:105867600-105877200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:105867600-105877400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:105867600-105877400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr14:105867600-105877400	Weak transcription	HSMMtube	muscle
27	chr14:105867800-105872800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr14:105867800-105875200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:105867800-105875400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:105867800-105876800	Weak transcription	Fetal Heart	heart
31	chr14:105868000-105876800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:105868400-105872800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:105868400-105873400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr14:105868400-105874000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:105868400-105876800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:105869200-105871800	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr14:105869400-105872000	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr14:105869600-105871800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr14:105869800-105872000	Enhancers	Thymus	Thymus
40	chr14:105870600-105872000	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr14:105871400-105872000	Enhancers	Primary T cells from cord blood	blood
42	chr14:105871600-105875600	Weak transcription	Primary B cells from cord blood	blood
43	chr14:105871600-105875600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr14:105871600-105877200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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