Variant report

Variant	rs6576088
Chromosome Location	chr14:105879197-105879198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105876338..105883262-chr14:105952928..105958741,9	MCF-7	breast:
2	chr14:105839154..105841024-chr14:105878885..105881309,2	MCF-7	breast:
3	chr14:105876037..105879613-chr14:105913633..105916640,4	MCF-7	breast:
4	chr14:105877577..105880126-chr14:105956145..105958197,2	K562	blood:
5	chr14:105863559..105868687-chr14:105874310..105880497,10	K562	blood:
6	chr14:105878253..105887592-chr14:105952988..105961277,12	MCF-7	breast:
7	chr14:105877356..105880049-chr14:105933735..105936444,3	MCF-7	breast:
8	chr14:105879192..105880978-chr14:105946583..105949410,2	MCF-7	breast:
9	chr14:105878872..105884276-chr14:105939558..105943133,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182979	Chromatin interaction
ENSG00000226174	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000182809	Chromatin interaction
ENSG00000242085	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10147154	0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs11621365	0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12435295	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28529463	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28541433	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4983613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4983614	0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6576085	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6576086	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6576087	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7149988	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73361094	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7492842	0.83[AMR][1000 genomes]
rs8014777	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105878200-105879400	Bivalent Enhancer	Brain Germinal Matrix	brain
2	chr14:105878200-105880000	Weak transcription	Liver	Liver
3	chr14:105878200-105880600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:105878200-105880600	Weak transcription	Right Atrium	heart
5	chr14:105878200-105880800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:105878200-105880800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr14:105878200-105880800	Weak transcription	HUVEC	blood vessel
8	chr14:105878200-105881000	Weak transcription	Brain Angular Gyrus	brain
9	chr14:105878200-105881000	Weak transcription	A549	lung
10	chr14:105878200-105881000	Weak transcription	HSMM	muscle
11	chr14:105878200-105881000	Weak transcription	NHLF	lung
12	chr14:105878200-105881200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:105878200-105881200	Weak transcription	K562	blood
14	chr14:105878200-105885200	Weak transcription	NHDF-Ad	bronchial
15	chr14:105878400-105879200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:105878400-105880600	Weak transcription	Left Ventricle	heart
17	chr14:105878400-105880600	Weak transcription	Ovary	ovary
18	chr14:105878400-105880800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:105878400-105880800	Weak transcription	Fetal Heart	heart
20	chr14:105878400-105880800	Weak transcription	Gastric	stomach
21	chr14:105878400-105880800	Weak transcription	Psoas Muscle	Psoas
22	chr14:105878400-105881200	Weak transcription	Fetal Lung	lung
23	chr14:105878400-105881400	Weak transcription	Primary T cells from cord blood	blood
24	chr14:105878600-105880600	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:105878600-105880600	Weak transcription	Pancreas	Pancrea
26	chr14:105878600-105880800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:105878800-105880200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:105878800-105880800	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links