Variant report

Variant	rs10136173
Chromosome Location	chr14:105910153-105910154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105909845..105911425-chr14:105913229..105915118,2	MCF-7	breast:
2	chr14:105909510..105911013-chr14:105931462..105933888,2	MCF-7	breast:
3	chr14:105897807..105900508-chr14:105907572..105910454,2	K562	blood:

Variant related genes	Relation type
ENSG00000182979	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4983623	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4983625	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4983628	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6420943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6576102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7161158	0.82[AFR][1000 genomes]
rs8009236	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105887600-105919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:105888600-105914800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:105888600-105918400	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:105889200-105939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:105889200-105939800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:105889400-105914400	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:105889400-105914800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:105889400-105916400	Weak transcription	Brain Anterior Caudate	brain
9	chr14:105890400-105916200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr14:105897400-105914800	Weak transcription	Right Atrium	heart
11	chr14:105897400-105917000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:105897600-105914600	Weak transcription	Fetal Lung	lung
13	chr14:105897600-105927200	Weak transcription	NH-A	brain
14	chr14:105897800-105940000	Weak transcription	K562	blood
15	chr14:105898400-105931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:105898400-105939800	Weak transcription	NHDF-Ad	bronchial
17	chr14:105900000-105915800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:105900800-105916400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:105901800-105913400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:105902800-105911800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:105902800-105914600	Strong transcription	Fetal Stomach	stomach
22	chr14:105902800-105925200	Strong transcription	Dnd41	blood
23	chr14:105902800-105937800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:105903000-105914400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:105903200-105935400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:105903400-105913200	Strong transcription	Fetal Intestine Small	intestine
27	chr14:105904000-105913600	Strong transcription	Fetal Thymus	thymus
28	chr14:105904000-105919000	Weak transcription	Hela-S3	cervix
29	chr14:105904400-105939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr14:105904600-105910200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:105906200-105910400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:105906600-105910200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:105906800-105911200	Weak transcription	NHEK	skin
34	chr14:105906800-105931000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:105907000-105910400	Strong transcription	Fetal Muscle Leg	muscle
36	chr14:105907000-105911200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:105907000-105914000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:105907000-105921800	Weak transcription	HMEC	breast
39	chr14:105907000-105940600	Weak transcription	Small Intestine	intestine
40	chr14:105907400-105912600	Weak transcription	HepG2	liver
41	chr14:105907400-105914800	Weak transcription	Osteobl	bone
42	chr14:105907600-105914400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr14:105907600-105915400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:105907600-105916800	Weak transcription	Brain Angular Gyrus	brain
45	chr14:105908400-105910200	Strong transcription	Fetal Brain Female	brain
46	chr14:105908800-105910200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:105909000-105910200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:105909200-105914800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:105909200-105916200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr14:105909200-105916600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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