Variant report

Variant	rs8009236
Chromosome Location	chr14:105908892-105908893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105906827..105908928-chr14:105939090..105941671,3	MCF-7	breast:
2	chr14:105892272..105894932-chr14:105906685..105909473,2	K562	blood:
3	chr14:105897807..105900508-chr14:105907572..105910454,2	K562	blood:

Variant related genes	Relation type
ENSG00000182809	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10136173	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4983409	0.81[AFR][1000 genomes]
rs4983623	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4983625	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4983628	1.00[AMR][1000 genomes]
rs6420943	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6576102	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105887600-105919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:105888600-105914800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:105888600-105918400	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:105889200-105939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:105889200-105939800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:105889400-105914400	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:105889400-105914800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:105889400-105916400	Weak transcription	Brain Anterior Caudate	brain
9	chr14:105890400-105916200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr14:105897400-105914800	Weak transcription	Right Atrium	heart
11	chr14:105897400-105917000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:105897600-105909000	Weak transcription	Aorta	Aorta
13	chr14:105897600-105909000	Weak transcription	HSMMtube	muscle
14	chr14:105897600-105914600	Weak transcription	Fetal Lung	lung
15	chr14:105897600-105927200	Weak transcription	NH-A	brain
16	chr14:105897800-105940000	Weak transcription	K562	blood
17	chr14:105898000-105909000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:105898400-105931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:105898400-105939800	Weak transcription	NHDF-Ad	bronchial
20	chr14:105899800-105909000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:105900000-105915800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:105900800-105916400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr14:105901800-105913400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:105902800-105909400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr14:105902800-105909800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr14:105902800-105911800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:105902800-105914600	Strong transcription	Fetal Stomach	stomach
28	chr14:105902800-105925200	Strong transcription	Dnd41	blood
29	chr14:105902800-105937800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr14:105903000-105914400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:105903200-105909200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:105903200-105909600	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:105903200-105909800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:105903200-105910000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:105903200-105935400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:105903400-105909000	Strong transcription	Thymus	Thymus
37	chr14:105903400-105909600	Strong transcription	NHLF	lung
38	chr14:105903400-105909800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
39	chr14:105903400-105913200	Strong transcription	Fetal Intestine Small	intestine
40	chr14:105903600-105909600	Strong transcription	Primary T cells from cord blood	blood
41	chr14:105903800-105909800	Strong transcription	Lung	lung
42	chr14:105904000-105909800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr14:105904000-105913600	Strong transcription	Fetal Thymus	thymus
44	chr14:105904000-105919000	Weak transcription	Hela-S3	cervix
45	chr14:105904400-105939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr14:105904600-105910200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr14:105904800-105909200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:105905200-105909200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr14:105905200-105909600	Strong transcription	Fetal Intestine Large	intestine
50	chr14:105905200-105909800	Strong transcription	HUES6 Cell Line	embryonic stem cell

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