Variant report

Variant	rs10142000
Chromosome Location	chr14:69153331-69153332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69151881..69156000-chr14:69158463..69160812,4	MCF-7	breast:
2	chr14:69153100..69154623-chr14:69261202..69264028,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242941	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10149709	1.00[AMR][1000 genomes]
rs10220656	1.00[AMR][1000 genomes]
rs17106128	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106140	1.00[AMR][1000 genomes]
rs28480157	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578014	1.00[AMR][1000 genomes]
rs28593675	1.00[AMR][1000 genomes]
rs9323517	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1329	chr14:69142476-69176987	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69141400-69153800	Enhancers	Fetal Intestine Large	intestine
2	chr14:69141400-69156800	Enhancers	Placenta	Placenta
3	chr14:69146200-69155400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:69146600-69157400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:69147000-69157400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:69147200-69157600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:69147400-69153400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr14:69147400-69153400	Enhancers	Fetal Thymus	thymus
9	chr14:69147400-69153600	Enhancers	Primary hematopoietic stem cells	blood
10	chr14:69147400-69153600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:69147600-69153400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:69147800-69153400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:69147800-69153400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:69147800-69153600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:69148000-69154800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:69148000-69157200	Enhancers	HMEC	breast
17	chr14:69148400-69153800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr14:69148600-69153600	Enhancers	Primary B cells from peripheral blood	blood
19	chr14:69148600-69153800	Enhancers	Fetal Intestine Small	intestine
20	chr14:69148600-69154400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:69148600-69155400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:69148800-69155400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:69149000-69153400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:69149200-69157600	Enhancers	HSMM	muscle
25	chr14:69149800-69156200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:69150200-69154600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:69150200-69157600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr14:69150400-69155000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr14:69150400-69155400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr14:69150400-69155400	Weak transcription	Ovary	ovary
31	chr14:69150400-69155600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr14:69150400-69155800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr14:69150600-69153600	Weak transcription	Aorta	Aorta
34	chr14:69150600-69155000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:69150600-69155400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:69150600-69155600	Weak transcription	Colonic Mucosa	Colon
37	chr14:69150600-69155600	Weak transcription	K562	blood
38	chr14:69150600-69157800	Enhancers	HSMMtube	muscle
39	chr14:69150800-69155400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr14:69150800-69155400	Weak transcription	Brain Substantia Nigra	brain
41	chr14:69151400-69155600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:69151400-69155600	Weak transcription	Brain Angular Gyrus	brain
43	chr14:69151600-69157000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr14:69151800-69154400	Enhancers	Hela-S3	cervix
45	chr14:69151800-69155000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr14:69152200-69153400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:69152200-69153600	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr14:69152200-69155400	Weak transcription	Colon Smooth Muscle	Colon
49	chr14:69152200-69155600	Weak transcription	Brain Hippocampus Middle	brain
50	chr14:69152200-69155600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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