Variant report

Variant	rs17106140
Chromosome Location	chr14:69144499-69144500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69142189..69144606-chr14:69257532..69259635,3	MCF-7	breast:
2	chr14:69143328..69145505-chr14:69159478..69161239,2	MCF-7	breast:
3	chr14:69134172..69139010-chr14:69141375..69149578,10	MCF-7	breast:
4	chr14:69143361..69145992-chr14:69259483..69261173,2	MCF-7	breast:
5	chr14:69142355..69144666-chr14:69256973..69259455,3	MCF-7	breast:
6	chr14:69144072..69146385-chr14:69151935..69154403,2	MCF-7	breast:
7	chr14:69142992..69145635-chr14:69147389..69151397,3	MCF-7	breast:
8	chr14:68978260..68979920-chr14:69142414..69145003,2	MCF-7	breast:
9	chr14:69142746..69145365-chr14:69149746..69153612,4	MCF-7	breast:
10	chr14:69139896..69142806-chr14:69144430..69145954,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000242941	Chromatin interaction
ENSG00000258623	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10142000	1.00[AMR][1000 genomes]
rs10149709	1.00[AMR][1000 genomes]
rs10220656	1.00[AMR][1000 genomes]
rs17106128	1.00[AMR][1000 genomes]
rs28480157	1.00[AMR][1000 genomes]
rs28578014	1.00[AMR][1000 genomes]
rs28593675	1.00[AMR][1000 genomes]
rs9323517	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1329	chr14:69142476-69176987	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69136200-69145800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:69136800-69150000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69137800-69148400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:69138600-69147800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:69138800-69147200	Weak transcription	Lung	lung
6	chr14:69139200-69150000	Weak transcription	Thymus	Thymus
7	chr14:69140000-69147200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:69140400-69144600	Weak transcription	Right Ventricle	heart
9	chr14:69140400-69145800	Weak transcription	Liver	Liver
10	chr14:69140600-69146400	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:69140600-69147400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:69140800-69146200	Weak transcription	Fetal Lung	lung
13	chr14:69141000-69145400	Weak transcription	Fetal Kidney	kidney
14	chr14:69141400-69145400	Enhancers	HMEC	breast
15	chr14:69141400-69146200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:69141400-69146800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:69141400-69147000	Enhancers	Fetal Intestine Small	intestine
18	chr14:69141400-69153800	Enhancers	Fetal Intestine Large	intestine
19	chr14:69141400-69156800	Enhancers	Placenta	Placenta
20	chr14:69141600-69145200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:69141600-69145600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:69141800-69145000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:69141800-69145800	Enhancers	Fetal Thymus	thymus
24	chr14:69142000-69148000	Weak transcription	Spleen	Spleen
25	chr14:69142200-69147200	Weak transcription	NHLF	lung
26	chr14:69142200-69150000	Weak transcription	Aorta	Aorta
27	chr14:69142400-69146400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:69142400-69147200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:69142400-69147200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:69142400-69147200	Weak transcription	Osteobl	bone
31	chr14:69142600-69145600	Enhancers	Fetal Heart	heart
32	chr14:69142600-69146000	Weak transcription	Hela-S3	cervix
33	chr14:69142600-69147400	Weak transcription	HSMM	muscle
34	chr14:69142800-69146400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:69143000-69144600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:69143000-69144800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:69143000-69146600	Enhancers	Duodenum Mucosa	Duodenum
38	chr14:69143000-69146600	Enhancers	Stomach Mucosa	stomach
39	chr14:69143000-69146800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:69143000-69148000	Weak transcription	HUVEC	blood vessel
41	chr14:69143200-69145400	Enhancers	Fetal Muscle Trunk	muscle
42	chr14:69143400-69146200	Weak transcription	HSMMtube	muscle
43	chr14:69143400-69146400	Weak transcription	NHDF-Ad	bronchial
44	chr14:69143400-69147400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr14:69143600-69147200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr14:69143800-69144600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:69143800-69145000	Enhancers	Esophagus	oesophagus
48	chr14:69143800-69146200	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:69143800-69146400	Strong transcription	Primary B cells from peripheral blood	blood
50	chr14:69143800-69146400	Weak transcription	Adipose Nuclei	Adipose

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