Variant report

Variant	rs10142436
Chromosome Location	chr14:55389241-55389242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10131563	1.00[AMR][1000 genomes]
rs10134647	0.84[AFR][1000 genomes]
rs10138594	1.00[AMR][1000 genomes]
rs10139408	0.91[AFR][1000 genomes]
rs10140092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141456	1.00[AMR][1000 genomes]
rs10143699	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145816	0.97[AFR][1000 genomes]
rs10148995	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847085	1.00[AMR][1000 genomes]
rs12323345	1.00[AMR][1000 genomes]
rs28411355	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413055	1.00[AMR][1000 genomes]
rs28662314	0.89[AFR][1000 genomes]
rs9972204	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55388800-55389400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr14:55389200-55389600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:55389200-55389600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr14:55389200-55390400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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