Variant report

Variant	rs10142629
Chromosome Location	chr14:68940092-68940093
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68774341..68775925-chr14:68938870..68941254,2	MCF-7	breast:
2	chr14:68939895..68941707-chr14:68980300..68982996,2	MCF-7	breast:
3	chr14:68925459..68926298-chr14:68939571..68940426,2	MCF-7	breast:
4	chr14:68939794..68940420-chr14:69036537..69037385,5	MCF-7	breast:
5	chr14:68930492..68947840-chr14:69251918..69264148,62	MCF-7	breast:
6	chr14:68939074..68942142-chr14:68974708..68977098,3	MCF-7	breast:
7	chr14:68939193..68941696-chr14:68948813..68950407,2	K562	blood:
8	chr14:68931847..68934865-chr14:68939017..68942648,4	MCF-7	breast:
9	chr14:68939920..68940583-chr14:69036494..69037171,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10133813	0.81[ASN][1000 genomes]
rs10135247	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10136055	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10139107	0.83[ASN][1000 genomes]
rs10146058	0.83[ASN][1000 genomes]
rs10148720	0.83[ASN][1000 genomes]
rs10782456	0.83[ASN][1000 genomes]
rs11158743	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12587397	0.83[ASN][1000 genomes]
rs12886429	0.81[ASN][1000 genomes]
rs12888301	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2145424	0.81[EUR][1000 genomes]
rs2753404	0.90[ASN][1000 genomes]
rs3784122	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784123	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784131	0.85[EUR][1000 genomes]
rs4899242	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902590	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902591	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902592	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902595	0.83[ASN][1000 genomes]
rs4902596	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68927600-68943800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:68928600-68949000	Weak transcription	Thymus	Thymus
3	chr14:68932200-68950000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:68933000-68946600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:68933400-68943000	Weak transcription	Right Atrium	heart
6	chr14:68933400-68943400	Weak transcription	Left Ventricle	heart
7	chr14:68933600-68942800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:68933600-68950600	Weak transcription	Aorta	Aorta
9	chr14:68933800-68942600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:68934200-68946200	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:68934800-68940200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:68935000-68940400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:68935200-68940200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:68935200-68940200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr14:68935400-68940200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr14:68935400-68940200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:68935400-68940200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:68935400-68940800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:68935400-68943400	Weak transcription	Fetal Thymus	thymus
20	chr14:68935600-68940200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:68935800-68940800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr14:68935800-68943200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:68935800-68943400	Weak transcription	Gastric	stomach
24	chr14:68936000-68942600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:68936000-68942800	Weak transcription	HSMM	muscle
26	chr14:68936000-68943600	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:68936000-68943600	Weak transcription	Esophagus	oesophagus
28	chr14:68936000-68947600	Weak transcription	Primary T cells from cord blood	blood
29	chr14:68936200-68941200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:68936200-68942800	Weak transcription	Hela-S3	cervix
31	chr14:68936200-68943600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:68936200-68943600	Weak transcription	Brain Anterior Caudate	brain
33	chr14:68936800-68940200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:68936800-68940200	Enhancers	H9 Cell Line	embryonic stem cell
35	chr14:68936800-68940200	Enhancers	Pancreas	Pancrea
36	chr14:68936800-68943400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:68936800-68944800	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr14:68937400-68940200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr14:68937400-68942800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:68937800-68941800	Weak transcription	Fetal Intestine Small	intestine
41	chr14:68937800-68942800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:68937800-68942800	Weak transcription	Osteobl	bone
43	chr14:68938000-68941000	Weak transcription	Fetal Intestine Large	intestine
44	chr14:68938000-68941200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr14:68938200-68940200	Enhancers	Fetal Muscle Leg	muscle
46	chr14:68938400-68940200	Enhancers	Primary B cells from cord blood	blood
47	chr14:68938600-68940200	Enhancers	Fetal Lung	lung
48	chr14:68938600-68940200	Enhancers	Spleen	Spleen
49	chr14:68938600-68942600	Weak transcription	Adipose Nuclei	Adipose
50	chr14:68938800-68940200	Enhancers	GM12878-XiMat	blood

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