Variant report

Variant	rs11158743
Chromosome Location	chr14:68905974-68905975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68905969..68908035-chr14:68908553..68911248,2	MCF-7	breast:
2	chr14:68905083..68907037-chr14:69260254..69261776,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10132294	0.82[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs10135247	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs10136055	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10142629	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10146058	0.94[GIH][hapmap]
rs10146321	0.88[CEU][hapmap];0.84[GIH][hapmap];0.90[MEX][hapmap]
rs10162434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12587397	0.89[GIH][hapmap]
rs12717531	1.00[CEU][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes]
rs12883132	0.92[AMR][1000 genomes]
rs12886429	0.94[GIH][hapmap]
rs12888301	0.87[CEU][hapmap]
rs12889666	0.90[MEX][hapmap]
rs12889770	0.90[MEX][hapmap]
rs12894080	0.90[MEX][hapmap]
rs1956534	0.86[CHD][hapmap];0.91[JPT][hapmap]
rs2145424	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2331701	0.81[JPT][hapmap]
rs2877465	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs3784117	1.00[MEX][hapmap]
rs3784120	0.90[MEX][hapmap]
rs3784122	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3784123	0.87[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3784131	0.87[CEU][hapmap]
rs4899242	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4902584	0.86[JPT][hapmap]
rs4902590	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4902591	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902592	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs746663	0.84[CHD][hapmap];0.91[JPT][hapmap]
rs8012610	0.82[JPT][hapmap]
rs8013236	0.91[JPT][hapmap]
rs9323508	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv14631	chr14:68901815-68906031	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv525928	chr14:68904059-68905974	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68895200-68914400	Weak transcription	A549	lung
2	chr14:68901400-68908600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr14:68901800-68907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:68903000-68911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:68903600-68907200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:68904000-68910000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:68905200-68906800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:68905600-68906800	Enhancers	Fetal Muscle Leg	muscle
9	chr14:68905800-68906000	Enhancers	Brain Cingulate Gyrus	brain
10	chr14:68905800-68906200	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links