Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68902379..68904838-chr14:68925274..68927509,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006816	0.87[CHB][hapmap]
rs10132294	0.91[JPT][hapmap]
rs10138140	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs10146772	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10149463	0.85[ASN][1000 genomes]
rs10162434	0.91[JPT][hapmap]
rs10467820	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs10873213	0.82[EUR][1000 genomes]
rs11158743	0.82[JPT][hapmap]
rs12886864	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs1468279	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs1956534	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1956537	0.86[CHB][hapmap]
rs2074563	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs2074565	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs2097800	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs2107340	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs2331701	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs2331702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784120	0.86[CHB][hapmap]
rs4325481	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902579	0.91[JPT][hapmap]
rs4902583	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs4902584	0.88[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5004090	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs6573837	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs7151360	0.92[ASN][1000 genomes]
rs746663	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs9323508	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9323512	0.85[CEU][hapmap]
rs9743618	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv14631	chr14:68901815-68906031	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68895200-68914400	Weak transcription	A549	lung
3	chr14:68901400-68908600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:68901800-68907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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