Variant report

Variant	rs4902579
Chromosome Location	chr14:68882980-68882981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68876335..68878729-chr14:68880781..68883526,2	MCF-7	breast:
2	chr14:68881675..68884365-chr14:69252579..69254360,2	MCF-7	breast:
3	chr14:68863146..68866898-chr14:68882756..68885018,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10132294	0.82[JPT][hapmap]
rs10146772	0.80[ASN][1000 genomes]
rs10162434	0.83[JPT][hapmap]
rs10873213	0.87[ASN][1000 genomes]
rs11625452	0.86[CHB][hapmap]
rs12435236	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs12435914	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs17105561	0.91[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17105571	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17105585	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1956534	0.82[JPT][hapmap]
rs2074562	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs2331696	0.82[CHB][hapmap]
rs2717217	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs2842322	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs3784119	0.81[CHB][hapmap]
rs4545737	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4902584	0.87[JPT][hapmap]
rs746663	0.82[JPT][hapmap]
rs8012610	0.91[JPT][hapmap]
rs8013236	0.83[JPT][hapmap]
rs8014025	0.81[CHB][hapmap]
rs8014234	0.86[CHB][hapmap]
rs9323508	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68867200-68886400	Weak transcription	Dnd41	blood
2	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:68872200-68883400	Weak transcription	Esophagus	oesophagus
4	chr14:68873400-68883800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:68875000-68883800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:68875000-68883800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:68875400-68884200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:68877000-68885600	Weak transcription	Primary T cells from cord blood	blood
9	chr14:68877000-68886000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:68877200-68890600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:68877400-68885200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:68880000-68885000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:68880200-68885000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:68880200-68885000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:68880200-68885000	Weak transcription	NHEK	skin
16	chr14:68880400-68884200	Enhancers	Colon Smooth Muscle	Colon
17	chr14:68880400-68885000	Weak transcription	HMEC	breast
18	chr14:68880600-68884200	Enhancers	Fetal Stomach	stomach
19	chr14:68880800-68883000	Weak transcription	Fetal Kidney	kidney
20	chr14:68880800-68885800	Enhancers	Fetal Lung	lung
21	chr14:68881000-68883200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr14:68881000-68886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:68881000-68890600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr14:68881400-68887400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:68881800-68884200	Enhancers	Stomach Smooth Muscle	stomach
26	chr14:68881800-68886000	Enhancers	Fetal Muscle Leg	muscle
27	chr14:68882000-68883200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:68882200-68884400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:68882200-68890000	Weak transcription	Small Intestine	intestine
30	chr14:68882400-68883400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr14:68882400-68883400	Weak transcription	Ovary	ovary
32	chr14:68882400-68883600	Weak transcription	A549	lung
33	chr14:68882400-68893400	Weak transcription	Fetal Intestine Small	intestine
34	chr14:68882800-68884000	Enhancers	Primary B cells from cord blood	blood

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