Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr14:68893614-68893837	A549	lung:	n/a	n/a
2	MAX	chr14:68893491-68894644	A549	lung:	n/a	n/a
3	FOSL1	chr14:68893497-68893995	HCT-116	colon:	n/a	n/a
4	MAX	chr14:68893386-68894698	A549	lung:	n/a	n/a
5	TCF12	chr14:68893537-68894051	A549	lung:	n/a	n/a
6	FOS	chr14:68893651-68893865	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr14:68893574-68893774	MCF10A-Er-Src	breast:	n/a	n/a
8	FOSL2	chr14:68893414-68893993	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68893378..68896303-chr14:69260766..69262455,2	MCF-7	breast:
2	chr14:68891874..68894078-chr14:68933895..68936431,2	MCF-7	breast:

Variant related genes	Relation type
PPIAP6	TF binding region
ENSG00000185650	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10132294	0.82[JPT][hapmap]
rs10162434	0.83[JPT][hapmap]
rs11625452	0.85[CHB][hapmap]
rs12435236	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs12435914	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs17105561	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs17105571	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs17105585	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1956534	0.82[JPT][hapmap]
rs2074562	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs2331696	0.82[CHB][hapmap]
rs2331702	0.85[ASN][1000 genomes]
rs2717217	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs2842322	0.86[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs3784119	0.81[CHB][hapmap]
rs4325481	0.85[ASN][1000 genomes]
rs4902579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4902584	0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs61986936	0.81[AMR][1000 genomes]
rs7151360	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs746663	0.82[JPT][hapmap]
rs8012610	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs8013236	0.83[JPT][hapmap]
rs8014025	0.81[CHB][hapmap]
rs8014234	0.85[CHB][hapmap]
rs9323508	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs9743618	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68886200-68894800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68888000-68901000	Weak transcription	Primary T cells from cord blood	blood
4	chr14:68893000-68893800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:68893200-68893800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:68893200-68894000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:68893200-68894000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:68893400-68893800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr14:68893400-68894000	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr14:68893600-68893800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:68893600-68894000	ZNF genes & repeats	Lung	lung
12	chr14:68893600-68894200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:68893600-68894200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:68893600-68894200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr14:68893600-68894800	Flanking Active TSS	A549	lung

Quick Search: