Variant report

Variant	rs4902584
Chromosome Location	chr14:68893964-68893965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10132294	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10146321	0.81[JPT][hapmap]
rs10146772	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs10149463	0.80[ASN][1000 genomes]
rs10162434	0.95[JPT][hapmap]
rs10873213	0.82[EUR][1000 genomes]
rs11158743	0.86[JPT][hapmap]
rs1956534	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2331702	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4325481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902579	0.87[JPT][hapmap]
rs4902583	0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs7151360	0.87[ASN][1000 genomes]
rs746663	0.86[JPT][hapmap]
rs8012610	0.88[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9323508	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs9743618	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68886200-68894800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68888000-68901000	Weak transcription	Primary T cells from cord blood	blood
4	chr14:68893200-68894000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:68893200-68894000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:68893400-68894000	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr14:68893600-68894000	ZNF genes & repeats	Lung	lung
8	chr14:68893600-68894200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:68893600-68894200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:68893600-68894200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr14:68893600-68894800	Flanking Active TSS	A549	lung
12	chr14:68893800-68894000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:68893800-68894200	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links