Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10132294	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10133813	0.82[JPT][hapmap]
rs10135247	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs10136055	0.87[CEU][hapmap];0.80[JPT][hapmap]
rs10139107	0.82[JPT][hapmap]
rs10146058	0.81[JPT][hapmap]
rs10146321	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs11158743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12587397	0.81[JPT][hapmap]
rs12717531	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12883132	0.89[EUR][1000 genomes]
rs12886429	0.81[JPT][hapmap]
rs12888301	0.89[CEU][hapmap]
rs12890360	0.80[CEU][hapmap]
rs1956534	0.91[JPT][hapmap]
rs2331694	0.82[CEU][hapmap]
rs2331701	0.82[JPT][hapmap]
rs2877465	1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3784122	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs3784123	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs3784131	0.87[CEU][hapmap]
rs4902579	0.83[JPT][hapmap]
rs4902583	0.83[JPT][hapmap]
rs4902584	0.95[JPT][hapmap]
rs4902595	0.82[JPT][hapmap]
rs746663	0.91[JPT][hapmap]
rs8012610	0.91[JPT][hapmap]
rs8013236	0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs9323508	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68882400-68893400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:68885200-68893600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68886200-68894800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:68888000-68893400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:68888000-68901000	Weak transcription	Primary T cells from cord blood	blood
7	chr14:68888200-68891800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:68888200-68892600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:68888200-68893200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:68888800-68893600	Weak transcription	Lung	lung
11	chr14:68889000-68893600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:68891400-68893600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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