Variant report

Variant	rs2107340
Chromosome Location	chr14:68930665-68930666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68929507..68933385-chr14:68987583..68991137,3	MCF-7	breast:
2	chr14:68928235..68931099-chr14:69252310..69254184,2	MCF-7	breast:
3	chr14:68930531..68933469-chr14:69030065..69032350,2	MCF-7	breast:
4	chr14:68930492..68947840-chr14:69251918..69264148,62	MCF-7	breast:
5	chr14:68930105..68933005-chr14:69055424..69057874,3	MCF-7	breast:
6	chr14:68713812..68718253-chr14:68930214..68933178,5	MCF-7	breast:
7	chr14:68924822..68938526-chr14:69257377..69265713,29	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10130683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133813	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10135247	0.83[JPT][hapmap]
rs10136055	0.82[JPT][hapmap]
rs10138140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10139107	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10146058	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10146772	0.88[CEU][hapmap]
rs10148720	0.83[ASN][1000 genomes]
rs10149340	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10149349	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10467820	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10782456	0.83[ASN][1000 genomes]
rs12435914	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12587397	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12886429	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12886864	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1468279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2040783	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2074562	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2074563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074564	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2093202	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2097800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331701	0.96[CEU][hapmap]
rs2717217	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2842322	0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs3784122	0.82[JPT][hapmap]
rs3784123	0.83[JPT][hapmap]
rs3784124	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4411448	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902594	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902595	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4902596	0.84[ASN][1000 genomes]
rs5004090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61986936	0.84[ASN][1000 genomes]
rs6573837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746663	0.96[CEU][hapmap]
rs8012610	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs9323508	0.81[JPT][hapmap]
rs9323512	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68922200-68937600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:68924600-68931200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:68924800-68936000	Enhancers	HSMM	muscle
4	chr14:68925000-68935200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68926000-68933000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:68926000-68935000	Weak transcription	Fetal Thymus	thymus
7	chr14:68926000-68935200	Weak transcription	Gastric	stomach
8	chr14:68926200-68931600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:68926200-68931600	Weak transcription	Placenta	Placenta
10	chr14:68926200-68931600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:68926200-68933000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:68926200-68933200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:68926200-68935000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:68926200-68940000	Weak transcription	Ovary	ovary
15	chr14:68926400-68931000	Weak transcription	NHDF-Ad	bronchial
16	chr14:68926400-68931200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:68926400-68931200	Weak transcription	NH-A	brain
18	chr14:68926400-68931200	Weak transcription	NHLF	lung
19	chr14:68926400-68931400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:68926400-68933000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:68926400-68933200	Enhancers	HSMMtube	muscle
22	chr14:68926400-68933400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:68926600-68931600	Enhancers	A549	lung
24	chr14:68926600-68933200	Weak transcription	Fetal Stomach	stomach
25	chr14:68926600-68935600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr14:68926800-68933200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr14:68926800-68933200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:68926800-68933200	Weak transcription	Fetal Intestine Small	intestine
29	chr14:68926800-68937600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:68927000-68936600	Weak transcription	Primary B cells from cord blood	blood
31	chr14:68927400-68931200	Weak transcription	Osteobl	bone
32	chr14:68927400-68933000	Weak transcription	Lung	lung
33	chr14:68927400-68933200	Weak transcription	Spleen	Spleen
34	chr14:68927400-68935000	Weak transcription	Esophagus	oesophagus
35	chr14:68927600-68931200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr14:68927600-68931600	Weak transcription	Pancreas	Pancrea
37	chr14:68927600-68933000	Weak transcription	Fetal Lung	lung
38	chr14:68927600-68933000	Weak transcription	Left Ventricle	heart
39	chr14:68927600-68933000	Weak transcription	Stomach Mucosa	stomach
40	chr14:68927600-68933200	Weak transcription	Right Atrium	heart
41	chr14:68927600-68943800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr14:68927800-68931200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr14:68927800-68933000	Weak transcription	Colon Smooth Muscle	Colon
44	chr14:68927800-68934200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr14:68928000-68930800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:68928000-68931400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:68928000-68931600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:68928000-68933000	Weak transcription	Adipose Nuclei	Adipose
49	chr14:68928200-68933000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr14:68928400-68939400	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links