Variant report

Variant	rs10143061
Chromosome Location	chr14:21907844-21907845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:21903199..21908176-chr14:21922150..21927422,17	MCF-7	breast:
2	chr14:21896199..21899132-chr14:21906380..21908136,2	K562	blood:
3	chr14:21907272..21910219-chr14:21916395..21918950,2	K562	blood:
4	chr14:21904171..21908174-chr14:21922677..21925847,6	K562	blood:
5	chr14:21906849..21909537-chr14:21910523..21912102,2	MCF-7	breast:
6	chr14:21907278..21910254-chr14:21912129..21914781,3	K562	blood:
7	chr14:21904638..21906944-chr14:21907761..21909355,3	MCF-7	breast:
8	chr14:21903062..21910356-chr14:21920914..21926084,11	K562	blood:
9	chr14:21907423..21910999-chr14:21920939..21926242,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100888	Chromatin interaction
ENSG00000263621	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1008268	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1008269	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10132333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10134108	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10135022	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137743	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10138699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10139379	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10143000	0.83[GIH][hapmap];0.82[MEX][hapmap]
rs10146717	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10150329	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151764	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10438064	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1045842	0.83[GIH][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes]
rs10782384	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11623599	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11623642	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11623737	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11624716	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12885503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1543494	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1952554	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1983768	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1998330	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1998331	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1998332	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1999139	0.83[GIH][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes]
rs2007434	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2065096	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2146062	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2149749	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2181125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2295865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2295866	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3762156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3762157	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3762158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3762159	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3762162	0.82[MEX][hapmap]
rs4144189	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4246991	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4982445	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4982446	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6571770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6571797	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6571826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571845	0.88[MEX][hapmap]
rs7145002	0.81[AMR][1000 genomes]
rs7147024	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7148741	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs7152833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7160488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8004294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8004388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8005163	0.82[MEX][hapmap]
rs8007893	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8008670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8011945	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8017451	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8017630	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8018369	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8020149	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8022395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022755	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs927412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322978	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv948957	chr14:21616875-21928338	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv530010	chr14:21692670-21923767	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv1054013	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv541991	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv530011	chr14:21876973-21985341	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10143061	TOX4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21905600-21910400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:21906000-21909200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:21906000-21910400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:21906000-21923400	Weak transcription	Aorta	Aorta
5	chr14:21906200-21908400	Weak transcription	Brain Angular Gyrus	brain
6	chr14:21906200-21908800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:21906200-21908800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:21906200-21908800	Weak transcription	Ovary	ovary
9	chr14:21906200-21908800	Weak transcription	Right Ventricle	heart
10	chr14:21906200-21909000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:21906200-21909000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:21906200-21909000	Weak transcription	Esophagus	oesophagus
13	chr14:21906200-21909000	Weak transcription	NHEK	skin
14	chr14:21906200-21909200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:21906200-21910000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:21906200-21912000	Weak transcription	Primary B cells from cord blood	blood
17	chr14:21906200-21914800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:21906200-21916400	Weak transcription	GM12878-XiMat	blood
19	chr14:21906200-21916600	Weak transcription	Small Intestine	intestine
20	chr14:21906200-21917400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:21906200-21917600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:21906200-21917600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:21906200-21917600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:21906200-21917600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:21906200-21917800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:21906200-21918000	Weak transcription	HUVEC	blood vessel
27	chr14:21906200-21918600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:21906200-21918600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr14:21906200-21918600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:21906200-21918600	Weak transcription	NH-A	brain
31	chr14:21906200-21919800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:21906200-21921200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr14:21906200-21921200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr14:21906200-21921200	Weak transcription	Fetal Brain Female	brain
35	chr14:21906200-21921400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr14:21906200-21921400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr14:21906200-21921400	Weak transcription	Hela-S3	cervix
38	chr14:21906200-21921600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:21906200-21921600	Weak transcription	NHLF	lung
40	chr14:21906200-21922000	Weak transcription	Psoas Muscle	Psoas
41	chr14:21906200-21922400	Weak transcription	Right Atrium	heart
42	chr14:21906200-21922400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr14:21906200-21922400	Weak transcription	Osteobl	bone
44	chr14:21906200-21923000	Weak transcription	Thymus	Thymus
45	chr14:21906200-21923000	Weak transcription	HSMMtube	muscle
46	chr14:21906400-21908600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:21906400-21908800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr14:21906400-21908800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr14:21906400-21908800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr14:21906400-21908800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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