Variant report

Variant	rs6571770
Chromosome Location	chr14:21819061-21819062
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21727359..21730774-chr14:21816654..21820383,4	K562	blood:
2	chr14:21812370..21815159-chr14:21817089..21819526,2	MCF-7	breast:
3	chr14:21817179..21819703-chr14:21826063..21828409,2	MCF-7	breast:
4	chr14:21788171..21789709-chr14:21819035..21821503,2	K562	blood:

Variant related genes	Relation type
ENSG00000092200	Chromatin interaction
ENSG00000092201	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1008268	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1008269	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10132333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10134108	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10135022	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10137743	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs10138699	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10139379	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10142205	0.81[ASN][1000 genomes]
rs10143061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10146717	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10150329	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10151764	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs10438064	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10438065	0.86[ASN][1000 genomes]
rs10438066	0.86[ASN][1000 genomes]
rs1045842	0.86[AMR][1000 genomes]
rs10782384	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11623599	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11623642	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11623737	0.83[AMR][1000 genomes]
rs11624716	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12885503	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1543494	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1952554	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1983768	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1998330	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1998331	0.87[EUR][1000 genomes]
rs1998332	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1999139	0.85[AMR][1000 genomes]
rs2007434	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2065096	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2146062	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2149749	0.87[AMR][1000 genomes]
rs2181125	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2295865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295866	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3762156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3762157	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3762158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3762159	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4144189	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs4246991	0.81[AMR][1000 genomes]
rs4982445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4982446	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58685090	0.83[ASN][1000 genomes]
rs61695584	0.86[ASN][1000 genomes]
rs6571797	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6571826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7145002	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs7147024	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7148741	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7152833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7155123	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7160488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8004294	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8004388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8007893	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8008670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8009789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8011945	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8017451	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8017630	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018369	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8020149	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8022395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8022755	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs927412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322978	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv916319	chr14:21507092-21896590	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv530770	chr14:21526410-21852363	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv1043570	chr14:21575068-21899964	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv541977	chr14:21575068-21899964	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv1048032	chr14:21602341-21847247	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	nsv541978	chr14:21602341-21847247	Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
11	nsv948957	chr14:21616875-21928338	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv1044822	chr14:21659344-21860081	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	esv1825348	chr14:21691941-21829404	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	nsv1051407	chr14:21692670-21907366	Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
15	nsv541984	chr14:21692670-21907366	Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
16	nsv530010	chr14:21692670-21923767	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
17	nsv428617	chr14:21721165-21871164	Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
18	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
19	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6571770	TOX4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21803600-21820200	Weak transcription	K562	blood
2	chr14:21809200-21819800	Weak transcription	Fetal Intestine Small	intestine
3	chr14:21809800-21819200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:21811200-21819200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:21811400-21819200	Weak transcription	Osteobl	bone
6	chr14:21811600-21820000	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:21811800-21820200	Weak transcription	Gastric	stomach
8	chr14:21815000-21819200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:21815000-21819800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:21815400-21819200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:21815600-21819200	Weak transcription	NHLF	lung
12	chr14:21815600-21820200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:21816400-21820800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:21816600-21819200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:21816600-21819200	Weak transcription	HUVEC	blood vessel
16	chr14:21816800-21819200	Weak transcription	Adipose Nuclei	Adipose
17	chr14:21817000-21820200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:21817000-21820200	Weak transcription	Pancreas	Pancrea
19	chr14:21817400-21819200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:21817400-21820000	Weak transcription	Fetal Kidney	kidney
21	chr14:21817600-21819200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:21817600-21819200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:21817600-21819200	Weak transcription	Brain Germinal Matrix	brain
24	chr14:21817600-21819200	Weak transcription	Fetal Intestine Large	intestine
25	chr14:21817600-21819200	Weak transcription	Fetal Stomach	stomach
26	chr14:21817600-21819200	Weak transcription	Lung	lung
27	chr14:21817600-21819200	Weak transcription	Psoas Muscle	Psoas
28	chr14:21817600-21819200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:21817600-21819200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr14:21817600-21819800	Weak transcription	Aorta	Aorta
31	chr14:21817600-21819800	Weak transcription	Ovary	ovary
32	chr14:21817600-21820000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr14:21817600-21820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr14:21817600-21820600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr14:21817600-21822400	Weak transcription	Stomach Mucosa	stomach
36	chr14:21817800-21820200	Weak transcription	Colonic Mucosa	Colon
37	chr14:21817800-21825400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr14:21818000-21819600	Weak transcription	Hela-S3	cervix
39	chr14:21818000-21819800	Weak transcription	Right Ventricle	heart
40	chr14:21818000-21820200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr14:21818000-21843000	Strong transcription	A549	lung
42	chr14:21818000-21848800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr14:21818000-21849200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:21818200-21819800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:21818200-21819800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:21818200-21819800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr14:21818200-21841200	Strong transcription	Fetal Brain Female	brain
48	chr14:21818400-21820000	Weak transcription	Esophagus	oesophagus
49	chr14:21818400-21820000	Weak transcription	Small Intestine	intestine
50	chr14:21818400-21820200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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