Variant report

Variant	rs10143565
Chromosome Location	chr14:31023530-31023531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31019395..31024975-chr14:31026715..31029555,5	MCF-7	breast:
2	chr14:31017567..31019430-chr14:31020798..31024107,3	MCF-7	breast:
3	chr14:31022291..31023881-chr14:31028011..31030850,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092140	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10129681	0.90[AMR][1000 genomes]
rs10132255	0.90[AMR][1000 genomes]
rs10135625	0.90[AMR][1000 genomes]
rs10135741	0.90[AMR][1000 genomes]
rs10140530	0.90[AMR][1000 genomes]
rs10141104	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10141346	0.90[AMR][1000 genomes]
rs10141827	0.90[AMR][1000 genomes]
rs10142125	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10151934	0.90[AMR][1000 genomes]
rs10152019	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10152074	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10220596	0.90[AMR][1000 genomes]
rs28440085	0.90[AMR][1000 genomes]
rs28495989	0.90[AMR][1000 genomes]
rs28542156	0.90[AMR][1000 genomes]
rs28649144	0.90[AMR][1000 genomes]
rs28649328	0.90[AMR][1000 genomes]
rs28721907	0.90[AMR][1000 genomes]
rs28798220	0.90[AMR][1000 genomes]
rs28860821	0.90[AMR][1000 genomes]
rs2889991	0.90[AMR][1000 genomes]
rs56250330	0.90[AMR][1000 genomes]
rs60108812	0.90[AMR][1000 genomes]
rs6571355	0.90[AMR][1000 genomes]
rs7144286	0.90[AMR][1000 genomes]
rs7149384	0.90[AMR][1000 genomes]
rs7150097	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7154354	0.90[AMR][1000 genomes]
rs7156916	0.80[AMR][1000 genomes]
rs7157203	0.90[AMR][1000 genomes]
rs74041103	0.90[AMR][1000 genomes]
rs74041112	0.90[AMR][1000 genomes]
rs74041117	0.90[AMR][1000 genomes]
rs74041128	0.90[AMR][1000 genomes]
rs8006594	0.90[AMR][1000 genomes]
rs8012029	0.90[AMR][1000 genomes]
rs8014497	0.90[AMR][1000 genomes]
rs8019014	0.80[AMR][1000 genomes]
rs9806012	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9944142	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31014600-31027800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:31019400-31023600	Enhancers	HMEC	breast
3	chr14:31019800-31023600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:31019800-31024000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:31021000-31027600	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:31021200-31027600	Weak transcription	Fetal Lung	lung
7	chr14:31021200-31027800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:31021600-31028000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:31022000-31023600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:31022200-31023600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:31023200-31027400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:31023200-31027400	Weak transcription	A549	lung
13	chr14:31023200-31027800	Weak transcription	HSMMtube	muscle
14	chr14:31023400-31027400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:31023400-31027400	Weak transcription	NHDF-Ad	bronchial
16	chr14:31023400-31027400	Weak transcription	NHEK	skin
17	chr14:31023400-31027400	Weak transcription	Osteobl	bone
18	chr14:31023400-31027600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:31023400-31027600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:31023400-31027600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:31023400-31027600	Weak transcription	NH-A	brain
22	chr14:31023400-31027600	Weak transcription	NHLF	lung
23	chr14:31023400-31027800	Weak transcription	HSMM	muscle

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