Variant report

Variant	rs28542156
Chromosome Location	chr14:31206146-31206147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10129681	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130571	0.81[AMR][1000 genomes]
rs10132255	1.00[AMR][1000 genomes]
rs10132507	0.81[AMR][1000 genomes]
rs10135625	1.00[AMR][1000 genomes]
rs10135741	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140530	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141104	1.00[AMR][1000 genomes]
rs10141346	1.00[AMR][1000 genomes]
rs10141827	1.00[AMR][1000 genomes]
rs10142125	1.00[AMR][1000 genomes]
rs10142747	0.81[AMR][1000 genomes]
rs10143105	0.81[AMR][1000 genomes]
rs10143565	0.90[AMR][1000 genomes]
rs10148278	0.81[AMR][1000 genomes]
rs10148782	0.81[AMR][1000 genomes]
rs10151934	1.00[AMR][1000 genomes]
rs10152019	1.00[AMR][1000 genomes]
rs10152074	1.00[AMR][1000 genomes]
rs10220596	1.00[AMR][1000 genomes]
rs2157700	0.81[AMR][1000 genomes]
rs28440085	1.00[AMR][1000 genomes]
rs28495989	1.00[AMR][1000 genomes]
rs28649144	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28649328	1.00[AMR][1000 genomes]
rs28721907	1.00[AMR][1000 genomes]
rs28798220	1.00[AMR][1000 genomes]
rs28860821	1.00[AMR][1000 genomes]
rs2889991	1.00[AMR][1000 genomes]
rs56250330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60108812	1.00[AMR][1000 genomes]
rs6571355	1.00[AMR][1000 genomes]
rs7140200	0.89[AMR][1000 genomes]
rs7144286	1.00[AMR][1000 genomes]
rs7149384	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7150097	1.00[AMR][1000 genomes]
rs7154354	1.00[AMR][1000 genomes]
rs7156057	0.81[AMR][1000 genomes]
rs7156916	0.90[AMR][1000 genomes]
rs7157203	1.00[AMR][1000 genomes]
rs7159972	0.81[AMR][1000 genomes]
rs7359107	0.81[AMR][1000 genomes]
rs74041103	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041112	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041117	1.00[AMR][1000 genomes]
rs74041128	1.00[AMR][1000 genomes]
rs74041241	0.81[AMR][1000 genomes]
rs8006594	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010048	0.81[AMR][1000 genomes]
rs8012029	1.00[AMR][1000 genomes]
rs8014497	1.00[AMR][1000 genomes]
rs8019014	0.90[AMR][1000 genomes]
rs8022976	0.81[AMR][1000 genomes]
rs9806012	1.00[AMR][1000 genomes]
rs9944142	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31123000-31212000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:31123400-31216400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:31160000-31206600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:31160000-31207200	Weak transcription	Right Ventricle	heart
5	chr14:31160800-31206200	Weak transcription	Small Intestine	intestine
6	chr14:31165000-31208200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:31166400-31214200	Weak transcription	Pancreas	Pancrea
8	chr14:31168200-31208600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:31179000-31207400	Weak transcription	Fetal Kidney	kidney
10	chr14:31181600-31207000	Weak transcription	Hela-S3	cervix
11	chr14:31186400-31206200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:31193000-31207200	Weak transcription	Brain Germinal Matrix	brain
13	chr14:31193000-31207800	Weak transcription	A549	lung
14	chr14:31196000-31207400	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:31196000-31208800	Weak transcription	HUVEC	blood vessel
16	chr14:31196200-31208600	Weak transcription	Spleen	Spleen
17	chr14:31196400-31208400	Weak transcription	Lung	lung
18	chr14:31196400-31216800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:31197600-31207800	Weak transcription	K562	blood
20	chr14:31197600-31208000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:31197800-31207000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:31199200-31207200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:31199400-31208200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:31199400-31208600	Weak transcription	Fetal Stomach	stomach
25	chr14:31199400-31209000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:31199400-31213400	Weak transcription	Brain Substantia Nigra	brain
27	chr14:31201200-31206200	Strong transcription	Primary B cells from cord blood	blood
28	chr14:31201200-31206200	Strong transcription	HepG2	liver
29	chr14:31201200-31206200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr14:31201400-31206200	Strong transcription	Liver	Liver
31	chr14:31201600-31206200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:31201600-31206400	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr14:31201800-31206200	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr14:31201800-31206400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:31202200-31206200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:31202400-31206200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:31202400-31206200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:31202400-31206200	Strong transcription	Primary T cells from cord blood	blood
39	chr14:31202400-31206200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr14:31202400-31206200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:31202400-31206200	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr14:31202400-31206200	Strong transcription	Dnd41	blood
43	chr14:31202400-31206200	Strong transcription	HSMM	muscle
44	chr14:31202400-31206400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:31202400-31208200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:31202600-31206200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:31202600-31206200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:31202600-31206200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr14:31202600-31206400	Strong transcription	Adipose Nuclei	Adipose
50	chr14:31202600-31206400	Strong transcription	Duodenum Mucosa	Duodenum

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