Variant report

Variant	rs7140200
Chromosome Location	chr14:31017109-31017110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10129681	0.89[AMR][1000 genomes]
rs10132255	0.89[AMR][1000 genomes]
rs10135625	0.89[AMR][1000 genomes]
rs10135741	0.89[AMR][1000 genomes]
rs10140530	0.89[AMR][1000 genomes]
rs10141104	0.89[AMR][1000 genomes]
rs10141346	0.89[AMR][1000 genomes]
rs10141827	0.89[AMR][1000 genomes]
rs10142125	0.89[AMR][1000 genomes]
rs10151934	0.89[AMR][1000 genomes]
rs10152019	0.89[AMR][1000 genomes]
rs10152074	0.89[AMR][1000 genomes]
rs10220596	0.89[AMR][1000 genomes]
rs28440085	0.89[AMR][1000 genomes]
rs28495989	0.89[AMR][1000 genomes]
rs28542156	0.89[AMR][1000 genomes]
rs28649144	0.89[AMR][1000 genomes]
rs28649328	0.89[AMR][1000 genomes]
rs28721907	0.89[AMR][1000 genomes]
rs28798220	0.89[AMR][1000 genomes]
rs28860821	0.89[AMR][1000 genomes]
rs2889991	0.89[AMR][1000 genomes]
rs56250330	0.89[AMR][1000 genomes]
rs60108812	0.89[AMR][1000 genomes]
rs6571355	0.89[AMR][1000 genomes]
rs7144286	0.89[AMR][1000 genomes]
rs7149384	0.89[AMR][1000 genomes]
rs7150097	0.89[AMR][1000 genomes]
rs7154354	0.89[AMR][1000 genomes]
rs7157203	0.89[AMR][1000 genomes]
rs74041103	0.89[AMR][1000 genomes]
rs74041112	0.89[AMR][1000 genomes]
rs74041117	0.89[AMR][1000 genomes]
rs74041128	0.89[AMR][1000 genomes]
rs8006594	0.89[AMR][1000 genomes]
rs8012029	0.89[AMR][1000 genomes]
rs8014497	0.89[AMR][1000 genomes]
rs9806012	0.89[AMR][1000 genomes]
rs9944142	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31002400-31020800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:31014600-31027800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:31017000-31017200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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