Variant report

Variant	rs2157700
Chromosome Location	chr14:31209977-31209978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31209279..31211309-chr14:31211598..31214843,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10129681	0.81[AMR][1000 genomes]
rs10130571	0.82[AMR][1000 genomes]
rs10132255	0.81[AMR][1000 genomes]
rs10132507	0.82[AMR][1000 genomes]
rs10135625	0.81[AMR][1000 genomes]
rs10135741	0.81[AMR][1000 genomes]
rs10140530	0.81[AMR][1000 genomes]
rs10141104	0.81[AMR][1000 genomes]
rs10141346	0.81[AMR][1000 genomes]
rs10141827	0.81[AMR][1000 genomes]
rs10142125	0.81[AMR][1000 genomes]
rs10142747	0.82[AMR][1000 genomes]
rs10143105	0.82[AMR][1000 genomes]
rs10148278	0.82[AMR][1000 genomes]
rs10148782	0.82[AMR][1000 genomes]
rs10151934	0.81[AMR][1000 genomes]
rs10152019	0.81[AMR][1000 genomes]
rs10152074	0.81[AMR][1000 genomes]
rs10220596	0.81[AMR][1000 genomes]
rs28440085	0.81[AMR][1000 genomes]
rs28495989	0.81[AMR][1000 genomes]
rs28542156	0.81[AMR][1000 genomes]
rs28649144	0.81[AMR][1000 genomes]
rs28649328	0.81[AMR][1000 genomes]
rs28721907	0.81[AMR][1000 genomes]
rs28798220	0.81[AMR][1000 genomes]
rs28860821	0.81[AMR][1000 genomes]
rs2889991	0.81[AMR][1000 genomes]
rs56250330	0.81[AMR][1000 genomes]
rs60108812	0.81[AMR][1000 genomes]
rs6571355	0.81[AMR][1000 genomes]
rs7144286	0.81[AMR][1000 genomes]
rs7149384	0.81[AMR][1000 genomes]
rs7150097	0.81[AMR][1000 genomes]
rs7154354	0.81[AMR][1000 genomes]
rs7156057	0.82[AMR][1000 genomes]
rs7157203	0.81[AMR][1000 genomes]
rs7159972	0.82[AMR][1000 genomes]
rs7359107	0.82[AMR][1000 genomes]
rs74041103	0.81[AMR][1000 genomes]
rs74041112	0.81[AMR][1000 genomes]
rs74041117	0.81[AMR][1000 genomes]
rs74041128	0.81[AMR][1000 genomes]
rs8006594	0.81[AMR][1000 genomes]
rs8012029	0.81[AMR][1000 genomes]
rs8014497	0.81[AMR][1000 genomes]
rs8022976	0.82[AMR][1000 genomes]
rs9806012	0.81[AMR][1000 genomes]
rs9944142	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31123000-31212000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:31123400-31216400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:31166400-31214200	Weak transcription	Pancreas	Pancrea
4	chr14:31196400-31216800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:31199400-31213400	Weak transcription	Brain Substantia Nigra	brain
6	chr14:31206000-31210000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:31206000-31210200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:31206000-31213000	Weak transcription	HSMMtube	muscle
9	chr14:31206200-31210000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr14:31206200-31210000	Weak transcription	Osteobl	bone
11	chr14:31206200-31210400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:31206200-31212800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:31206200-31212800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:31206200-31216600	Weak transcription	Brain Anterior Caudate	brain
15	chr14:31206400-31210800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:31206400-31211400	Weak transcription	Adipose Nuclei	Adipose
17	chr14:31206600-31210400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:31208200-31210400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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