Variant report

Variant	rs10132507
Chromosome Location	chr14:31032594-31032595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31032048..31033600-chr14:31089609..31092118,2	K562	blood:

Variant related genes	Relation type
ENSG00000092108	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10129681	0.81[AMR][1000 genomes]
rs10130571	1.00[AMR][1000 genomes]
rs10132255	0.81[AMR][1000 genomes]
rs10135625	0.81[AMR][1000 genomes]
rs10135741	0.81[AMR][1000 genomes]
rs10140530	0.81[AMR][1000 genomes]
rs10141104	0.81[AMR][1000 genomes]
rs10141346	0.81[AMR][1000 genomes]
rs10141827	0.81[AMR][1000 genomes]
rs10142125	0.81[AMR][1000 genomes]
rs10142747	1.00[AMR][1000 genomes]
rs10143105	1.00[AMR][1000 genomes]
rs10148278	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs10148782	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151934	0.81[AMR][1000 genomes]
rs10152019	0.81[AMR][1000 genomes]
rs10152074	0.81[AMR][1000 genomes]
rs10220596	0.81[AMR][1000 genomes]
rs2157700	0.82[AMR][1000 genomes]
rs28440085	0.81[AMR][1000 genomes]
rs28495989	0.81[AMR][1000 genomes]
rs28542156	0.81[AMR][1000 genomes]
rs28649144	0.81[AMR][1000 genomes]
rs28649328	0.81[AMR][1000 genomes]
rs28721907	0.81[AMR][1000 genomes]
rs28798220	0.81[AMR][1000 genomes]
rs28860821	0.81[AMR][1000 genomes]
rs2889991	0.81[AMR][1000 genomes]
rs56250330	0.81[AMR][1000 genomes]
rs60108812	0.81[AMR][1000 genomes]
rs6571355	0.81[AMR][1000 genomes]
rs7144286	0.81[AMR][1000 genomes]
rs7149384	0.81[AMR][1000 genomes]
rs7150097	0.81[AMR][1000 genomes]
rs7154354	0.81[AMR][1000 genomes]
rs7156057	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs7157203	0.81[AMR][1000 genomes]
rs7159972	1.00[AMR][1000 genomes]
rs7359107	0.88[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs74041103	0.81[AMR][1000 genomes]
rs74041112	0.81[AMR][1000 genomes]
rs74041117	0.81[AMR][1000 genomes]
rs74041128	0.81[AMR][1000 genomes]
rs8004508	0.84[AMR][1000 genomes]
rs8006594	0.81[AMR][1000 genomes]
rs8012029	0.81[AMR][1000 genomes]
rs8014497	0.81[AMR][1000 genomes]
rs8022976	1.00[AMR][1000 genomes]
rs9806012	0.81[AMR][1000 genomes]
rs9944142	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31029000-31071800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:31029200-31033600	Weak transcription	Lung	lung
3	chr14:31029200-31034400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:31029200-31042200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:31029200-31071800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:31029400-31059400	Weak transcription	Left Ventricle	heart
7	chr14:31029400-31060400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:31029800-31038800	Weak transcription	Adipose Nuclei	Adipose
9	chr14:31029800-31054000	Weak transcription	Fetal Intestine Large	intestine
10	chr14:31030000-31038400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:31030200-31032600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:31030200-31038400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:31030200-31039000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:31030200-31039000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr14:31030200-31053200	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:31030400-31034000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:31030400-31034000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:31030400-31035000	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:31030400-31035000	Weak transcription	Psoas Muscle	Psoas
20	chr14:31030400-31035800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:31030400-31037600	Weak transcription	Fetal Kidney	kidney
22	chr14:31030400-31041600	Weak transcription	Brain Anterior Caudate	brain
23	chr14:31030400-31042600	Weak transcription	Ovary	ovary
24	chr14:31030400-31042800	Weak transcription	Primary B cells from cord blood	blood
25	chr14:31030400-31044600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:31030400-31046600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr14:31030400-31050600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr14:31030400-31050600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr14:31030400-31056600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr14:31030400-31059200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:31030600-31032600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:31030600-31038600	Weak transcription	Primary T cells from cord blood	blood
33	chr14:31030600-31042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:31030600-31046600	Weak transcription	NH-A	brain
35	chr14:31030800-31034000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:31030800-31035200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr14:31030800-31038400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr14:31030800-31039200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:31030800-31046600	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr14:31031000-31032600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr14:31031000-31032600	Weak transcription	Fetal Brain Male	brain
42	chr14:31031000-31033200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:31031000-31033400	Weak transcription	Fetal Lung	lung
44	chr14:31031000-31033800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:31031000-31035400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr14:31031000-31035600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:31031000-31036200	Weak transcription	Fetal Brain Female	brain
48	chr14:31031000-31038600	Weak transcription	NHLF	lung
49	chr14:31031000-31038800	Weak transcription	NHDF-Ad	bronchial
50	chr14:31031000-31039200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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