Variant report

Variant	rs10143664
Chromosome Location	chr14:69558678-69558679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69443330..69446418-chr14:69556824..69560512,4	MCF-7	breast:
2	chr14:69329812..69331555-chr14:69556654..69558817,2	MCF-7	breast:
3	chr14:69443630..69446372-chr14:69557045..69560333,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs171386	1.00[AMR][1000 genomes]
rs7141235	1.00[YRI][hapmap]
rs74059945	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69522400-69564800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:69528600-69560200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:69535600-69565200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr14:69540400-69560600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:69541400-69559800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:69542600-69570600	Strong transcription	Primary T cells from cord blood	blood
7	chr14:69543000-69559000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:69545800-69559000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:69546000-69563200	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr14:69546200-69559000	Strong transcription	GM12878-XiMat	blood
11	chr14:69546200-69559200	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
13	chr14:69546600-69558800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:69547200-69560400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:69547600-69559200	Strong transcription	Fetal Muscle Leg	muscle
16	chr14:69547600-69559400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:69547800-69558800	Strong transcription	Left Ventricle	heart
18	chr14:69548000-69558800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr14:69548000-69560200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:69548000-69563000	Strong transcription	Fetal Thymus	thymus
21	chr14:69548000-69563600	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:69548200-69559200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr14:69548200-69567400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr14:69548400-69559400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr14:69548600-69560200	Weak transcription	Fetal Heart	heart
26	chr14:69548800-69559800	Weak transcription	A549	lung
27	chr14:69548800-69560200	Weak transcription	Stomach Mucosa	stomach
28	chr14:69549200-69559000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr14:69549400-69559000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:69549600-69558800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:69550000-69568000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr14:69550600-69559000	Strong transcription	Primary hematopoietic stem cells	blood
33	chr14:69550600-69559200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr14:69551200-69558800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr14:69551600-69560200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr14:69552000-69558800	Strong transcription	HepG2	liver
37	chr14:69552600-69558800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:69552600-69558800	Strong transcription	Thymus	Thymus
39	chr14:69553200-69559000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:69554200-69558800	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:69554200-69560600	Weak transcription	Aorta	Aorta
42	chr14:69554800-69559200	Strong transcription	Liver	Liver
43	chr14:69555200-69558800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:69555200-69558800	Strong transcription	Fetal Lung	lung
45	chr14:69555400-69558800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr14:69555600-69558800	Strong transcription	Fetal Brain Female	brain
47	chr14:69556000-69558800	Strong transcription	HSMM	muscle
48	chr14:69556200-69558800	Strong transcription	Adipose Nuclei	Adipose
49	chr14:69556200-69559200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr14:69556200-69559200	Strong transcription	Osteobl	bone

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