Variant report

Variant	rs7141235
Chromosome Location	chr14:69589249-69589250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69588946..69590991-chr14:69599196..69601563,2	MCF-7	breast:
2	chr14:69583217..69585076-chr14:69586731..69589401,2	K562	blood:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

rs_ID	r²[population]
rs10143664	1.00[YRI][hapmap]
rs10498527	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1105625	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11158784	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11158785	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11158786	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1275207	1.00[ASN][1000 genomes]
rs1275406	1.00[ASN][1000 genomes]
rs1275417	1.00[CHB][hapmap]
rs1629783	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1710989	1.00[CHB][hapmap]
rs1710990	1.00[CHB][hapmap]
rs1710993	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17758214	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001355	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2331918	1.00[CHB][hapmap]
rs4899280	1.00[CHB][hapmap]
rs8004546	1.00[TSI][hapmap]
rs8014402	0.89[ASN][1000 genomes]
rs9323521	1.00[CHB][hapmap];1.00[CHD][hapmap]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
2	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:69568600-69596000	Weak transcription	K562	blood
5	chr14:69568800-69595600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:69582000-69595800	Weak transcription	Fetal Heart	heart
7	chr14:69582000-69595800	Weak transcription	A549	lung
8	chr14:69582200-69596000	Weak transcription	Small Intestine	intestine
9	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:69584800-69595600	Weak transcription	Brain Germinal Matrix	brain
11	chr14:69584800-69596200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:69584800-69596200	Weak transcription	Stomach Mucosa	stomach
13	chr14:69585000-69589400	Strong transcription	Primary B cells from cord blood	blood
14	chr14:69585000-69589400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr14:69585000-69590000	Weak transcription	Gastric	stomach
16	chr14:69585000-69595400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:69585000-69595800	Weak transcription	NHLF	lung
18	chr14:69585000-69596000	Weak transcription	Brain Substantia Nigra	brain
19	chr14:69585000-69596200	Weak transcription	Colonic Mucosa	Colon
20	chr14:69585000-69599600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:69585000-69600000	Weak transcription	Right Ventricle	heart
22	chr14:69585000-69604400	Weak transcription	Spleen	Spleen
23	chr14:69585200-69589600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:69585200-69589600	Weak transcription	Colon Smooth Muscle	Colon
25	chr14:69585200-69590400	Weak transcription	Pancreas	Pancrea
26	chr14:69585200-69595200	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:69585200-69595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:69585200-69595800	Weak transcription	NHEK	skin
29	chr14:69585200-69596200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:69585200-69600000	Weak transcription	Aorta	Aorta
31	chr14:69585200-69600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:69585200-69605800	Weak transcription	Lung	lung
33	chr14:69585400-69589400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr14:69585400-69595800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:69585400-69595800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:69585400-69595800	Weak transcription	Fetal Brain Male	brain
37	chr14:69585400-69596200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr14:69585400-69596400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:69585600-69591200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:69585600-69595600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:69585600-69595600	Weak transcription	Brain Anterior Caudate	brain
42	chr14:69585600-69595800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr14:69585600-69595800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:69585600-69595800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr14:69585600-69595800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr14:69585600-69595800	Weak transcription	Fetal Brain Female	brain
47	chr14:69585600-69596000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:69585600-69596000	Weak transcription	HSMMtube	muscle
49	chr14:69585600-69596200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:69585600-69596400	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links