Variant report

Variant	rs1629783
Chromosome Location	chr14:69568156-69568157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69378018..69378941-chr14:69567707..69568234,2	K562	blood:
2	chr14:69378318..69378983-chr14:69567699..69568343,4	MCF-7	breast:
3	chr14:69329734..69330494-chr14:69567678..69568621,2	MCF-7	breast:
4	chr14:69320321..69321132-chr14:69567817..69568701,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10148349	0.86[GIH][hapmap]
rs10498527	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs1105625	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs11158784	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs11158785	1.00[CHB][hapmap];0.89[GIH][hapmap];0.82[YRI][hapmap]
rs11158786	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs1275207	1.00[ASN][1000 genomes]
rs1275406	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275417	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.82[YRI][hapmap]
rs1275419	0.87[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1710989	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap]
rs1710990	1.00[CHB][hapmap]
rs1710993	1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs17758214	1.00[ASN][1000 genomes]
rs2001355	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs2331918	1.00[CHB][hapmap]
rs4899280	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4902695	0.81[GIH][hapmap]
rs66870630	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7141235	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8014402	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9323521	1.00[CHB][hapmap];0.89[GIH][hapmap];0.82[YRI][hapmap]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69542600-69570600	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
3	chr14:69558600-69569600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:69558600-69570400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:69558600-69572000	Weak transcription	Brain Germinal Matrix	brain
6	chr14:69558600-69578600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:69558800-69569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:69558800-69569600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:69558800-69570000	Weak transcription	Fetal Brain Female	brain
10	chr14:69558800-69572000	Weak transcription	Esophagus	oesophagus
11	chr14:69558800-69572000	Weak transcription	Spleen	Spleen
12	chr14:69558800-69581600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:69558800-69582000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
15	chr14:69559000-69569600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:69559000-69583800	Weak transcription	Colonic Mucosa	Colon
17	chr14:69559200-69569400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:69560600-69575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:69561200-69568400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:69561200-69569600	Weak transcription	GM12878-XiMat	blood
22	chr14:69561200-69572000	Weak transcription	Gastric	stomach
23	chr14:69561200-69577200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:69561200-69581600	Weak transcription	Aorta	Aorta
25	chr14:69561200-69581600	Weak transcription	Lung	lung
26	chr14:69561200-69581600	Weak transcription	Pancreas	Pancrea
27	chr14:69561200-69581600	Weak transcription	Small Intestine	intestine
28	chr14:69561400-69569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:69561400-69581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:69561600-69569600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr14:69561600-69572000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:69561600-69581600	Weak transcription	Brain Angular Gyrus	brain
33	chr14:69561600-69581600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:69561800-69568200	Weak transcription	HSMM	muscle
35	chr14:69561800-69570000	Weak transcription	Fetal Lung	lung
36	chr14:69561800-69572000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:69561800-69572000	Weak transcription	Left Ventricle	heart
38	chr14:69561800-69581600	Weak transcription	Fetal Heart	heart
39	chr14:69562000-69582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr14:69562600-69571600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:69563000-69569600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr14:69563000-69569600	Weak transcription	Placenta	Placenta
43	chr14:69563400-69569400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr14:69563400-69572000	Weak transcription	Dnd41	blood
45	chr14:69563400-69584600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr14:69563600-69569600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr14:69563600-69581400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr14:69563800-69568200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:69563800-69572000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr14:69563800-69574800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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