Variant report

Variant	rs4902695
Chromosome Location	chr14:69651281-69651282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69649327..69654053-chr14:69656065..69659968,5	K562	blood:
2	chr14:69650205..69651953-chr14:69652418..69654418,2	MCF-7	breast:
3	chr14:69626126..69627931-chr14:69649788..69652518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258957	Chromatin interaction
ENSG00000081177	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1013762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10148349	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs1043254	1.00[CHB][hapmap]
rs10498527	0.91[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs1105625	0.91[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs11158784	0.95[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs11158785	0.95[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs11158786	0.91[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs11158789	0.83[EUR][1000 genomes]
rs1147481	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs11626985	1.00[JPT][hapmap]
rs11627004	1.00[JPT][hapmap]
rs11627476	1.00[JPT][hapmap]
rs11628126	0.95[CEU][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs1275407	0.91[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs1275414	0.84[EUR][1000 genomes]
rs1275415	0.91[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs1275417	0.95[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs1275419	1.00[CHD][hapmap];0.84[GIH][hapmap]
rs1626122	0.95[EUR][1000 genomes]
rs1629783	0.81[GIH][hapmap]
rs1710989	0.91[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs1710990	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs1892297	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1914004	1.00[JPT][hapmap]
rs1950712	1.00[JPT][hapmap]
rs2001355	0.91[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs2176255	1.00[JPT][hapmap]
rs2331918	1.00[JPT][hapmap]
rs3173	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs3742905	1.00[JPT][hapmap]
rs4899280	1.00[JPT][hapmap]
rs67313346	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7144704	1.00[JPT][hapmap]
rs7150225	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8004546	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs8008141	1.00[JPT][hapmap]
rs9323521	0.95[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4902695	SYNJ2BP	cis	cerebellum	SCAN
rs4902695	RAD51L1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69650000-69651400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr14:69650000-69651600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:69650200-69651600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:69650800-69657600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr14:69651200-69657200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:69651200-69657400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:69651200-69657800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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