Variant report

Variant	rs1892297
Chromosome Location	chr14:69588597-69588598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69583217..69585076-chr14:69586731..69589401,2	K562	blood:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1007407	1.00[JPT][hapmap]
rs10083451	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10130013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10131077	0.98[ASN][1000 genomes]
rs10132533	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10134578	0.84[ASN][1000 genomes]
rs10135102	0.81[ASN][1000 genomes]
rs10135971	0.81[ASN][1000 genomes]
rs1013762	0.92[CEU][hapmap]
rs10139274	0.81[CHB][hapmap]
rs10139873	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10141040	0.98[ASN][1000 genomes]
rs10143302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10145565	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10146339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10147119	0.81[ASN][1000 genomes]
rs10147369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10148614	1.00[CHB][hapmap]
rs10149232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10498527	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10498528	0.81[CHB][hapmap]
rs1105625	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158782	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11158784	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs11158785	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs11158786	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11158788	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11158789	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11158790	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs11158795	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11158798	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1147481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11622889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11628126	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12431846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12434775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12435594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12437418	0.86[ASN][1000 genomes]
rs12589028	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1275407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1275413	0.92[EUR][1000 genomes]
rs1275414	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1275415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275417	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs12879406	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12886715	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12889849	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1626122	0.87[EUR][1000 genomes]
rs1710989	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1710990	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs1890944	0.81[CHB][hapmap]
rs1914004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2001355	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2001998	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2012764	1.00[JPT][hapmap]
rs2056153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2300875	1.00[JPT][hapmap]
rs2331919	0.90[ASN][1000 genomes]
rs28613298	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs3211166	0.89[CHB][hapmap]
rs4899290	0.81[CHB][hapmap]
rs4902691	0.81[CHB][hapmap]
rs4902695	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902698	0.81[CHB][hapmap]
rs4902704	0.81[CHB][hapmap]
rs6573869	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6573872	0.83[ASN][1000 genomes]
rs67313346	0.86[EUR][1000 genomes]
rs7148045	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7151331	0.81[CHB][hapmap]
rs7160629	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8008184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8008829	0.81[CHB][hapmap]
rs9323521	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs9323522	0.94[ASN][1000 genomes]
rs9323524	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
2	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:69568600-69596000	Weak transcription	K562	blood
5	chr14:69568800-69595600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:69569600-69589200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr14:69573800-69589200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr14:69574200-69589200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:69574600-69589200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:69574800-69588600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:69575200-69589200	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr14:69576200-69588600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:69577200-69589000	Strong transcription	Fetal Muscle Leg	muscle
14	chr14:69577400-69588600	Strong transcription	Fetal Intestine Large	intestine
15	chr14:69579200-69588800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:69579200-69589000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:69579600-69588600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:69580200-69588600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:69581400-69588600	Strong transcription	Osteobl	bone
20	chr14:69581400-69589200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:69581600-69588600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:69581600-69589000	Strong transcription	HMEC	breast
23	chr14:69581600-69589200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:69581600-69589200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr14:69582000-69588600	Strong transcription	HepG2	liver
26	chr14:69582000-69595800	Weak transcription	Fetal Heart	heart
27	chr14:69582000-69595800	Weak transcription	A549	lung
28	chr14:69582200-69596000	Weak transcription	Small Intestine	intestine
29	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:69584800-69595600	Weak transcription	Brain Germinal Matrix	brain
31	chr14:69584800-69596200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:69584800-69596200	Weak transcription	Stomach Mucosa	stomach
33	chr14:69585000-69589400	Strong transcription	Primary B cells from cord blood	blood
34	chr14:69585000-69589400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr14:69585000-69590000	Weak transcription	Gastric	stomach
36	chr14:69585000-69595400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:69585000-69595800	Weak transcription	NHLF	lung
38	chr14:69585000-69596000	Weak transcription	Brain Substantia Nigra	brain
39	chr14:69585000-69596200	Weak transcription	Colonic Mucosa	Colon
40	chr14:69585000-69599600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr14:69585000-69600000	Weak transcription	Right Ventricle	heart
42	chr14:69585000-69604400	Weak transcription	Spleen	Spleen
43	chr14:69585200-69589600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr14:69585200-69589600	Weak transcription	Colon Smooth Muscle	Colon
45	chr14:69585200-69590400	Weak transcription	Pancreas	Pancrea
46	chr14:69585200-69595200	Weak transcription	Brain Hippocampus Middle	brain
47	chr14:69585200-69595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr14:69585200-69595800	Weak transcription	NHEK	skin
49	chr14:69585200-69596200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:69585200-69600000	Weak transcription	Aorta	Aorta

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