Variant report

Variant	rs11158790
Chromosome Location	chr14:69617972-69617973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69617775..69618630-chr14:69709107..69709873,3	MCF-7	breast:
2	chr14:69614281..69621283-chr14:69656459..69660724,14	MCF-7	breast:
3	chr14:69583942..69585536-chr14:69616276..69618691,2	MCF-7	breast:
4	chr14:69604147..69606504-chr14:69616675..69618256,2	MCF-7	breast:
5	chr14:69616886..69618539-chr14:69863511..69866374,2	K562	blood:
6	chr14:69616829..69621784-chr14:69657152..69660113,5	K562	blood:
7	chr14:69614082..69618294-chr14:69668784..69671867,3	MCF-7	breast:
8	chr14:69616886..69618828-chr14:69863511..69865491,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000081177	Chromatin interaction
ENSG00000258957	Chromatin interaction
ENSG00000139990	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1007407	0.82[JPT][hapmap]
rs10083451	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10130013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10131077	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10132533	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10134578	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10135102	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10139873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10141040	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143302	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10143769	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10145565	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10146339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10147119	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10147369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10148614	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10149232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11158792	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11158795	0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158798	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1147481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11622889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11625374	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11628126	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12431846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12432970	0.85[JPT][hapmap]
rs12434478	0.85[JPT][hapmap]
rs12434775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12435594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12437418	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12586650	0.83[GIH][hapmap]
rs12587583	0.83[GIH][hapmap]
rs12589028	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1275407	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1275415	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs12879406	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12886715	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12889849	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs12890560	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12894822	0.83[GIH][hapmap]
rs17093668	0.85[JPT][hapmap]
rs1892297	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1914004	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2001998	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2012764	0.82[JPT][hapmap]
rs2024892	0.84[JPT][hapmap]
rs2024893	0.85[JPT][hapmap]
rs2056153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2139540	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2268968	0.85[JPT][hapmap]
rs2300875	0.82[JPT][hapmap]
rs2331918	0.96[CEU][hapmap]
rs2331919	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2331956	0.80[AMR][1000 genomes]
rs28613298	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3211166	0.87[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs34999390	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4899280	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs4902682	0.85[JPT][hapmap]
rs56008928	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61980267	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61980270	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980284	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6573869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573872	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71423349	0.84[AMR][1000 genomes]
rs7144307	0.88[CEU][hapmap];0.91[GIH][hapmap]
rs7148045	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs7160629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8005658	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8008184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8015876	0.85[JPT][hapmap]
rs9323522	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9323524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11158790	WDR22	Cis_1M	lymphoblastoid	RTeQTL
rs11158790	SPTB	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69601000-69618000	Weak transcription	Esophagus	oesophagus
3	chr14:69606600-69618000	Weak transcription	Lung	lung
4	chr14:69612000-69618000	Weak transcription	Gastric	stomach
5	chr14:69614000-69618000	Weak transcription	Colonic Mucosa	Colon
6	chr14:69615000-69618000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:69616400-69621600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:69616600-69618000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:69616800-69618000	Enhancers	Duodenum Mucosa	Duodenum
10	chr14:69616800-69618000	Enhancers	Psoas Muscle	Psoas
11	chr14:69616800-69618000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr14:69616800-69618000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr14:69616800-69618000	Enhancers	Small Intestine	intestine
14	chr14:69616800-69618400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:69617000-69618000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:69617200-69618000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:69617400-69618000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:69617400-69618000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr14:69617400-69618000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr14:69617400-69618200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:69617400-69618200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:69617400-69618200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr14:69617400-69618200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:69617400-69618200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:69617400-69618200	Flanking Active TSS	Fetal Lung	lung
26	chr14:69617400-69618200	Flanking Active TSS	Dnd41	blood
27	chr14:69617400-69618200	Flanking Active TSS	Hela-S3	cervix
28	chr14:69617400-69618200	Flanking Active TSS	NHLF	lung
29	chr14:69617400-69620200	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr14:69617400-69620600	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr14:69617600-69618000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:69617600-69618000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr14:69617600-69618000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr14:69617600-69618000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:69617600-69618000	Enhancers	Liver	Liver
36	chr14:69617600-69618000	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr14:69617600-69618000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:69617600-69618000	Active TSS	Fetal Brain Male	brain
39	chr14:69617600-69618000	Weak transcription	Left Ventricle	heart
40	chr14:69617600-69618000	Flanking Active TSS	A549	lung
41	chr14:69617600-69618000	Flanking Active TSS	HepG2	liver
42	chr14:69617600-69618200	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr14:69617600-69618200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr14:69617600-69618200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:69617600-69618200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr14:69617600-69618200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr14:69617600-69618200	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr14:69617600-69618200	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr14:69617600-69618200	Weak transcription	Spleen	Spleen
50	chr14:69617600-69618200	Flanking Active TSS	HUVEC	blood vessel

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