Variant report

Variant	rs10149232
Chromosome Location	chr14:69609852-69609853
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69608197..69610454-chr14:69620173..69622020,3	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1007407	1.00[JPT][hapmap]
rs10083451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10130013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10131077	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132533	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10134578	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10135102	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10135643	0.81[ASN][1000 genomes]
rs10135971	0.84[ASN][1000 genomes]
rs10139274	0.81[CHB][hapmap]
rs10139873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10141040	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10143769	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10145565	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10146339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147119	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10147369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148614	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10498528	0.81[CHB][hapmap]
rs11158780	0.81[ASN][1000 genomes]
rs11158782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11158787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158790	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158792	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11158795	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158798	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1147481	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs11622889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625374	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11628126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12431846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12434764	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12434775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12435594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12437418	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12589028	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1275407	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1275415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12879406	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12886715	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12889849	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12890560	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1890944	0.81[CHB][hapmap]
rs1892297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1914004	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2001998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2012764	1.00[JPT][hapmap]
rs2056153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2139540	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2300875	1.00[JPT][hapmap]
rs2331918	0.96[CEU][hapmap]
rs2331919	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2331956	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28613298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3211166	0.87[CEU][hapmap];0.89[CHB][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34999390	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4338726	0.81[ASN][1000 genomes]
rs4899280	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4899290	0.81[CHB][hapmap]
rs4902691	0.81[CHB][hapmap]
rs4902698	0.81[CHB][hapmap]
rs4902704	0.81[CHB][hapmap]
rs56008928	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61980267	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61980270	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980284	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6573869	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573872	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71423349	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7144307	0.88[CEU][hapmap]
rs7148045	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7151331	0.81[CHB][hapmap]
rs7160629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8005658	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8008184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008829	0.81[CHB][hapmap]
rs8017103	0.81[ASN][1000 genomes]
rs9323522	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9323524	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10149232	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69596600-69612800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:69596600-69613800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:69596600-69614800	Weak transcription	Fetal Brain Female	brain
5	chr14:69596600-69614800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:69596600-69615000	Weak transcription	Thymus	Thymus
7	chr14:69596600-69615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:69596600-69615400	Weak transcription	Placenta	Placenta
9	chr14:69596600-69616400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:69596600-69617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:69597600-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:69600000-69617000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:69600200-69611400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:69600400-69611200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:69600400-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:69600400-69616800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:69600400-69616800	Weak transcription	Fetal Brain Male	brain
18	chr14:69600600-69617800	Weak transcription	Aorta	Aorta
19	chr14:69601000-69613200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr14:69601000-69615600	Weak transcription	HMEC	breast
21	chr14:69601000-69615800	Weak transcription	A549	lung
22	chr14:69601000-69616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:69601000-69617000	Weak transcription	Ovary	ovary
24	chr14:69601000-69618000	Weak transcription	Esophagus	oesophagus
25	chr14:69601400-69616000	Weak transcription	Hela-S3	cervix
26	chr14:69604800-69611400	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:69604800-69611800	Weak transcription	Pancreas	Pancrea
28	chr14:69604800-69616800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr14:69605000-69616600	Weak transcription	Brain Germinal Matrix	brain
30	chr14:69605200-69614800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:69605200-69616800	Weak transcription	Small Intestine	intestine
32	chr14:69605200-69617400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr14:69605400-69615000	Weak transcription	HSMMtube	muscle
34	chr14:69605400-69617000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr14:69605400-69617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr14:69605400-69617600	Weak transcription	Brain Substantia Nigra	brain
37	chr14:69605600-69613800	Weak transcription	HUVEC	blood vessel
38	chr14:69605600-69614000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr14:69605600-69614000	Weak transcription	Fetal Lung	lung
40	chr14:69605600-69614000	Weak transcription	HSMM	muscle
41	chr14:69605600-69615400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr14:69605600-69615400	Weak transcription	NH-A	brain
43	chr14:69605600-69616000	Weak transcription	Fetal Heart	heart
44	chr14:69605600-69616800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr14:69605600-69617600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr14:69605600-69617800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr14:69605800-69611200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:69605800-69613600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr14:69605800-69613800	Weak transcription	Adipose Nuclei	Adipose
50	chr14:69605800-69614600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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