Variant report

Variant	rs8008184
Chromosome Location	chr14:69567852-69567853
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69378018..69378941-chr14:69567707..69568234,2	K562	blood:
2	chr14:69378318..69378983-chr14:69567699..69568343,4	MCF-7	breast:
3	chr14:69329734..69330494-chr14:69567678..69568621,2	MCF-7	breast:
4	chr14:69320321..69321132-chr14:69567817..69568701,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1007407	1.00[JPT][hapmap]
rs10083451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10130013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10131077	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10132533	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10134578	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10135102	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10135643	0.85[ASN][1000 genomes]
rs10135971	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10139873	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10141040	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10143302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143769	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10145565	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10146339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10147119	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10147369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10148614	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10149232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158780	0.81[ASN][1000 genomes]
rs11158782	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11158787	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158790	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158792	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11158795	1.00[ASW][hapmap];0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11158798	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1147481	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs11622889	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11625374	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11628126	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12431846	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12434764	0.82[AFR][1000 genomes]
rs12434775	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12435594	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12437418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12586650	0.83[GIH][hapmap]
rs12587583	0.83[GIH][hapmap]
rs12589028	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1275407	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1275415	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12879406	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12886715	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12889849	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12890560	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12894822	0.83[GIH][hapmap]
rs17106754	0.83[CHD][hapmap]
rs1892297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1914004	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2001998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2012764	1.00[JPT][hapmap]
rs2056153	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139540	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2300875	1.00[JPT][hapmap]
rs2331918	0.96[CEU][hapmap]
rs2331919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28613298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3211166	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs34999390	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4143922	0.83[CHD][hapmap]
rs4338726	0.81[ASN][1000 genomes]
rs4899280	1.00[CEU][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs56008928	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61980267	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61980270	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980284	0.81[EUR][1000 genomes]
rs6573869	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573872	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71423349	0.81[AMR][1000 genomes]
rs7144307	0.88[CEU][hapmap];0.91[GIH][hapmap]
rs7148045	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs7160629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8005658	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8008735	0.83[CHD][hapmap]
rs8017103	0.81[ASN][1000 genomes]
rs9323522	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323524	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8008184	SPTB	cis	cerebellum	SCAN
rs8008184	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69542600-69570600	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
3	chr14:69550000-69568000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:69558600-69569600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:69558600-69570400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:69558600-69572000	Weak transcription	Brain Germinal Matrix	brain
7	chr14:69558600-69578600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr14:69558800-69569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr14:69558800-69569600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr14:69558800-69570000	Weak transcription	Fetal Brain Female	brain
11	chr14:69558800-69572000	Weak transcription	Esophagus	oesophagus
12	chr14:69558800-69572000	Weak transcription	Spleen	Spleen
13	chr14:69558800-69581600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:69558800-69582000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
16	chr14:69559000-69569600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr14:69559000-69583800	Weak transcription	Colonic Mucosa	Colon
18	chr14:69559200-69569400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:69560600-69575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:69561200-69568400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:69561200-69569600	Weak transcription	GM12878-XiMat	blood
23	chr14:69561200-69572000	Weak transcription	Gastric	stomach
24	chr14:69561200-69577200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:69561200-69581600	Weak transcription	Aorta	Aorta
26	chr14:69561200-69581600	Weak transcription	Lung	lung
27	chr14:69561200-69581600	Weak transcription	Pancreas	Pancrea
28	chr14:69561200-69581600	Weak transcription	Small Intestine	intestine
29	chr14:69561400-69569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:69561400-69581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:69561600-69569600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr14:69561600-69572000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:69561600-69581600	Weak transcription	Brain Angular Gyrus	brain
34	chr14:69561600-69581600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr14:69561800-69568200	Weak transcription	HSMM	muscle
36	chr14:69561800-69570000	Weak transcription	Fetal Lung	lung
37	chr14:69561800-69572000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr14:69561800-69572000	Weak transcription	Left Ventricle	heart
39	chr14:69561800-69581600	Weak transcription	Fetal Heart	heart
40	chr14:69562000-69582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:69562600-69571600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:69563000-69568000	Weak transcription	Fetal Thymus	thymus
43	chr14:69563000-69569600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr14:69563000-69569600	Weak transcription	Placenta	Placenta
45	chr14:69563400-69569400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr14:69563400-69572000	Weak transcription	Dnd41	blood
47	chr14:69563400-69584600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:69563600-69568000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:69563600-69569600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr14:69563600-69581400	Weak transcription	Brain Cingulate Gyrus	brain

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