Variant report

Variant	rs1275415
Chromosome Location	chr14:69611710-69611711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69607266..69609423-chr14:69610673..69612601,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1007407	1.00[JPT][hapmap]
rs10083451	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10130013	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10131077	0.98[ASN][1000 genomes]
rs10132533	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10134578	0.84[ASN][1000 genomes]
rs10135102	0.81[ASN][1000 genomes]
rs10135971	0.81[ASN][1000 genomes]
rs1013762	0.91[CEU][hapmap]
rs10139873	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10141040	0.98[ASN][1000 genomes]
rs10143302	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10145565	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs10146339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10147119	0.81[ASN][1000 genomes]
rs10147369	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10148614	1.00[CHB][hapmap]
rs10149232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10498527	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1105625	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11158782	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs11158784	0.87[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs11158785	0.87[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs11158786	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11158787	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11158788	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11158789	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11158790	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs11158795	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11158798	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1147481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11622889	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11628126	0.84[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12431846	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12434775	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12435594	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12437418	0.86[ASN][1000 genomes]
rs12589028	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs1275407	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1275413	0.92[EUR][1000 genomes]
rs1275414	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1275417	0.87[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs12879406	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12886715	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12889849	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1626122	0.87[EUR][1000 genomes]
rs1710989	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1710990	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs1892297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2001355	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2001998	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs2012764	1.00[JPT][hapmap]
rs2056153	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2300875	1.00[JPT][hapmap]
rs2331919	0.90[ASN][1000 genomes]
rs28613298	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs3211166	0.89[CHB][hapmap]
rs4902695	0.91[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs6573869	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6573872	0.83[ASN][1000 genomes]
rs67313346	0.86[EUR][1000 genomes]
rs7148045	1.00[JPT][hapmap]
rs7160629	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8008184	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9323521	0.87[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs9323522	0.94[ASN][1000 genomes]
rs9323524	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1275415	RAD51L1	cis	parietal	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69596600-69612800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:69596600-69613800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:69596600-69614800	Weak transcription	Fetal Brain Female	brain
5	chr14:69596600-69614800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:69596600-69615000	Weak transcription	Thymus	Thymus
7	chr14:69596600-69615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:69596600-69615400	Weak transcription	Placenta	Placenta
9	chr14:69596600-69616400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:69596600-69617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:69597600-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:69600000-69617000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:69600400-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:69600400-69616800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:69600400-69616800	Weak transcription	Fetal Brain Male	brain
16	chr14:69600600-69617800	Weak transcription	Aorta	Aorta
17	chr14:69601000-69613200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:69601000-69615600	Weak transcription	HMEC	breast
19	chr14:69601000-69615800	Weak transcription	A549	lung
20	chr14:69601000-69616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:69601000-69617000	Weak transcription	Ovary	ovary
22	chr14:69601000-69618000	Weak transcription	Esophagus	oesophagus
23	chr14:69601400-69616000	Weak transcription	Hela-S3	cervix
24	chr14:69604800-69611800	Weak transcription	Pancreas	Pancrea
25	chr14:69604800-69616800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:69605000-69616600	Weak transcription	Brain Germinal Matrix	brain
27	chr14:69605200-69614800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:69605200-69616800	Weak transcription	Small Intestine	intestine
29	chr14:69605200-69617400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr14:69605400-69615000	Weak transcription	HSMMtube	muscle
31	chr14:69605400-69617000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:69605400-69617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:69605400-69617600	Weak transcription	Brain Substantia Nigra	brain
34	chr14:69605600-69613800	Weak transcription	HUVEC	blood vessel
35	chr14:69605600-69614000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:69605600-69614000	Weak transcription	Fetal Lung	lung
37	chr14:69605600-69614000	Weak transcription	HSMM	muscle
38	chr14:69605600-69615400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:69605600-69615400	Weak transcription	NH-A	brain
40	chr14:69605600-69616000	Weak transcription	Fetal Heart	heart
41	chr14:69605600-69616800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:69605600-69617600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr14:69605600-69617800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr14:69605800-69613600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:69605800-69613800	Weak transcription	Adipose Nuclei	Adipose
46	chr14:69605800-69614600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr14:69605800-69614800	Weak transcription	NHDF-Ad	bronchial
48	chr14:69605800-69615400	Weak transcription	Left Ventricle	heart
49	chr14:69605800-69615400	Weak transcription	NHEK	skin
50	chr14:69605800-69617000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links