Variant report

Variant	rs11158789
Chromosome Location	chr14:69572003-69572004
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69374685..69378392-chr14:69571910..69575766,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10146649	0.80[ASN][1000 genomes]
rs10498527	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1105625	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158784	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11158785	0.86[ASN][1000 genomes]
rs11158786	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158788	0.89[EUR][1000 genomes]
rs1147481	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11628126	0.85[EUR][1000 genomes]
rs1275407	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1275413	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1275414	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1275415	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1275417	0.86[EUR][1000 genomes]
rs1626122	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1710989	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1710990	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1892297	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2001355	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2331918	0.80[ASN][1000 genomes]
rs4899280	0.87[ASN][1000 genomes]
rs4902695	0.83[EUR][1000 genomes]
rs67313346	0.85[EUR][1000 genomes]
rs9323521	0.86[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
2	chr14:69558600-69578600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:69558800-69581600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:69558800-69582000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
6	chr14:69559000-69583800	Weak transcription	Colonic Mucosa	Colon
7	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:69560600-69575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:69561200-69577200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:69561200-69581600	Weak transcription	Aorta	Aorta
11	chr14:69561200-69581600	Weak transcription	Lung	lung
12	chr14:69561200-69581600	Weak transcription	Pancreas	Pancrea
13	chr14:69561200-69581600	Weak transcription	Small Intestine	intestine
14	chr14:69561400-69581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:69561600-69581600	Weak transcription	Brain Angular Gyrus	brain
16	chr14:69561600-69581600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:69561800-69581600	Weak transcription	Fetal Heart	heart
18	chr14:69562000-69582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:69563400-69584600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:69563600-69581400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:69563800-69574800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:69564000-69581400	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:69564000-69581800	Weak transcription	Brain Substantia Nigra	brain
24	chr14:69564000-69584600	Weak transcription	Fetal Brain Male	brain
25	chr14:69565000-69572200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:69565000-69584400	Weak transcription	Right Ventricle	heart
27	chr14:69565200-69573800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:69565200-69574600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:69565200-69580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr14:69565200-69581200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:69565200-69582800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr14:69565200-69583800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:69565200-69584000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:69565400-69582000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:69566000-69583600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr14:69566200-69572200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:69566600-69580800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr14:69567800-69572400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:69568000-69583000	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr14:69568400-69572600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:69568400-69581600	Weak transcription	Brain Anterior Caudate	brain
43	chr14:69568600-69572200	Weak transcription	HUVEC	blood vessel
44	chr14:69568600-69573800	Weak transcription	A549	lung
45	chr14:69568600-69574000	Weak transcription	Colon Smooth Muscle	Colon
46	chr14:69568600-69586000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr14:69568600-69596000	Weak transcription	K562	blood
48	chr14:69568800-69595600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr14:69569400-69572400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr14:69569400-69572600	Strong transcription	Primary monocytes fromperipheralblood	blood

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