Variant report

Variant	rs1147481
Chromosome Location	chr14:69597769-69597770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69596677..69600515-chr14:69612349..69615880,3	K562	blood:
2	chr14:69597111..69600267-chr14:69602814..69605697,3	K562	blood:
3	chr14:69590965..69593609-chr14:69597562..69600294,2	MCF-7	breast:
4	chr14:69592620..69595171-chr14:69596587..69598380,2	K562	blood:
5	chr14:69595999..69598242-chr14:69617492..69620242,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1007407	0.82[JPT][hapmap]
rs10083451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10130013	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10131077	0.90[ASN][1000 genomes]
rs10132533	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1013762	0.92[CEU][hapmap]
rs10139873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10141040	0.90[ASN][1000 genomes]
rs10143302	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10145565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10146339	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs10147369	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs10148614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10149232	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs10498527	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1105625	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11158782	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11158784	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs11158785	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs11158786	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11158787	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11158788	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11158789	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11158790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11158795	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs11158798	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs11622889	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs11628126	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12431846	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12432970	0.85[JPT][hapmap]
rs12434478	0.85[JPT][hapmap]
rs12434775	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12435594	1.00[CHB][hapmap]
rs12437418	0.94[ASN][1000 genomes]
rs12589028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1275407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275413	0.92[EUR][1000 genomes]
rs1275414	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1275415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1275417	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs12879406	0.90[CHB][hapmap]
rs12886715	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12889849	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1626122	0.87[EUR][1000 genomes]
rs17093668	0.85[JPT][hapmap]
rs1710989	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1710990	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs1892297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1914004	1.00[CHB][hapmap]
rs2001355	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2001998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2012764	0.82[JPT][hapmap]
rs2024892	0.85[JPT][hapmap]
rs2024893	0.85[JPT][hapmap]
rs2056153	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2268968	0.85[JPT][hapmap]
rs2300875	0.82[JPT][hapmap]
rs2331919	0.82[ASN][1000 genomes]
rs28613298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3211166	0.89[CHB][hapmap]
rs4902682	0.85[JPT][hapmap]
rs4902695	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs6573869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs67313346	0.86[EUR][1000 genomes]
rs7148045	0.82[JPT][hapmap]
rs7160629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8008184	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs8015876	0.85[JPT][hapmap]
rs9323521	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs9323522	0.86[ASN][1000 genomes]
rs9323524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69585000-69599600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:69585000-69600000	Weak transcription	Right Ventricle	heart
4	chr14:69585000-69604400	Weak transcription	Spleen	Spleen
5	chr14:69585200-69600000	Weak transcription	Aorta	Aorta
6	chr14:69585200-69600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:69585200-69605800	Weak transcription	Lung	lung
8	chr14:69585600-69600200	Weak transcription	Esophagus	oesophagus
9	chr14:69585600-69609200	Weak transcription	Fetal Kidney	kidney
10	chr14:69588800-69599600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:69589200-69598000	Weak transcription	Psoas Muscle	Psoas
12	chr14:69590600-69599800	Weak transcription	Gastric	stomach
13	chr14:69595400-69598200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:69595400-69605400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr14:69595600-69598400	Enhancers	Liver	Liver
16	chr14:69595600-69600600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr14:69595600-69602000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr14:69595600-69602400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr14:69595800-69598200	Enhancers	Primary T cells from cord blood	blood
20	chr14:69595800-69598200	Enhancers	NHDF-Ad	bronchial
21	chr14:69595800-69598400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr14:69595800-69598600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:69595800-69599200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr14:69595800-69600400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:69595800-69600600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr14:69595800-69601200	Enhancers	Colon Smooth Muscle	Colon
27	chr14:69595800-69602600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:69596200-69597800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:69596200-69597800	Enhancers	GM12878-XiMat	blood
30	chr14:69596200-69601000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:69596400-69599800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr14:69596400-69601000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:69596400-69605200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr14:69596600-69598000	Weak transcription	Left Ventricle	heart
35	chr14:69596600-69598200	Weak transcription	K562	blood
36	chr14:69596600-69598600	Weak transcription	Ovary	ovary
37	chr14:69596600-69598600	Weak transcription	Stomach Mucosa	stomach
38	chr14:69596600-69598800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:69596600-69599000	Weak transcription	HSMMtube	muscle
40	chr14:69596600-69599200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr14:69596600-69599200	Weak transcription	Hela-S3	cervix
42	chr14:69596600-69599400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:69596600-69599400	Weak transcription	Fetal Lung	lung
44	chr14:69596600-69599400	Weak transcription	Right Atrium	heart
45	chr14:69596600-69599400	Weak transcription	NHEK	skin
46	chr14:69596600-69599600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:69596600-69599600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr14:69596600-69599600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr14:69596600-69599600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:69596600-69599600	Weak transcription	Adipose Nuclei	Adipose

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