Variant report

Variant	rs3211166
Chromosome Location	chr14:69703158-69703159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69618405..69621160-chr14:69702714..69704911,2	MCF-7	breast:
2	chr14:69691034..69693480-chr14:69702340..69704031,2	MCF-7	breast:
3	chr14:69697379..69699453-chr14:69702660..69704964,2	K562	blood:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10083451	0.87[CEU][hapmap];0.89[CHB][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap]
rs10130013	0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap]
rs10132533	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs10135102	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10139274	0.88[CHB][hapmap]
rs10139873	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs10143302	0.87[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap]
rs10145565	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[MEX][hapmap]
rs10146339	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs10147119	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10147369	0.87[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap]
rs10148614	0.88[CHB][hapmap]
rs10149232	0.87[CEU][hapmap];0.89[CHB][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10498528	0.88[CHB][hapmap]
rs11158782	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs11158787	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs11158790	0.87[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs11158792	0.86[AFR][1000 genomes]
rs11158795	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs11158798	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1147481	0.89[CHB][hapmap]
rs11622889	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.86[AFR][1000 genomes]
rs11625374	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11628126	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs12431706	0.91[AMR][1000 genomes]
rs12431846	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap]
rs12434764	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12434775	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap]
rs12435594	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs12589028	0.87[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs1275407	0.89[CHB][hapmap]
rs1275415	0.89[CHB][hapmap]
rs12879406	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12886715	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12889849	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12890560	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17106754	0.88[CHB][hapmap]
rs17106817	0.86[CHB][hapmap]
rs1890944	0.88[CHB][hapmap]
rs1892297	0.89[CHB][hapmap]
rs1914004	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs2001998	0.87[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs2056153	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs2139540	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2139541	0.91[AMR][1000 genomes]
rs2331918	0.83[CEU][hapmap]
rs2331956	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28613298	0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs34999390	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3742899	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs3742900	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs4143922	0.88[CHB][hapmap]
rs4243633	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs4899280	0.87[CEU][hapmap]
rs4899290	0.88[CHB][hapmap]
rs4902691	0.88[CHB][hapmap]
rs4902698	0.88[CHB][hapmap]
rs4902704	0.88[CHB][hapmap]
rs56008928	0.85[AMR][1000 genomes]
rs61980267	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs61980270	0.86[AMR][1000 genomes]
rs61980284	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6573869	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs71423349	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7144307	0.83[GIH][hapmap]
rs7148045	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7151331	0.88[CHB][hapmap]
rs7157918	0.81[GIH][hapmap]
rs7160629	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs8005658	0.83[AFR][1000 genomes]
rs8007859	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs8008184	0.84[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs8008735	0.88[CHB][hapmap]
rs8008829	0.88[CHB][hapmap]
rs9323524	0.87[CEU][hapmap];0.89[CHB][hapmap];0.88[MEX][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3211166	WDR22	Cis_1M	lymphoblastoid	RTeQTL
rs3211166	SPTB	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
2	chr14:69676200-69703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:69678400-69709200	Weak transcription	NHDF-Ad	bronchial
5	chr14:69678600-69709200	Weak transcription	A549	lung
6	chr14:69688600-69707400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:69689600-69703200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:69692800-69708400	Weak transcription	Stomach Mucosa	stomach
9	chr14:69693800-69704600	Weak transcription	HSMMtube	muscle
10	chr14:69694000-69711200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
12	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
13	chr14:69694400-69704600	Weak transcription	Osteobl	bone
14	chr14:69695200-69708800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:69695600-69706000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:69695600-69708800	Strong transcription	Liver	Liver
17	chr14:69696000-69703200	Weak transcription	Dnd41	blood
18	chr14:69696400-69708800	Strong transcription	Stomach Smooth Muscle	stomach
19	chr14:69696600-69709600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:69697600-69704000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:69697600-69704600	Weak transcription	Fetal Kidney	kidney
22	chr14:69698600-69706600	Weak transcription	Fetal Heart	heart
23	chr14:69698600-69709200	Strong transcription	Brain Angular Gyrus	brain
24	chr14:69698800-69707800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr14:69698800-69708000	Strong transcription	Fetal Intestine Large	intestine
26	chr14:69698800-69709200	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr14:69699400-69703200	Weak transcription	NH-A	brain
28	chr14:69700200-69709400	Strong transcription	Fetal Stomach	stomach
29	chr14:69700600-69709400	Strong transcription	Fetal Muscle Leg	muscle
30	chr14:69700800-69704200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:69700800-69706000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:69700800-69708600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:69700800-69708600	Strong transcription	Adipose Nuclei	Adipose
34	chr14:69700800-69709000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:69701000-69705400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:69701000-69708600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:69701000-69708600	Strong transcription	Primary T cells from cord blood	blood
38	chr14:69701000-69709400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:69701000-69709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:69701200-69707000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:69701200-69708000	Strong transcription	Lung	lung
42	chr14:69701200-69708800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr14:69701200-69709200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:69701200-69709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:69701400-69703400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr14:69701400-69705200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr14:69701400-69705600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:69701400-69705600	Strong transcription	Fetal Thymus	thymus
49	chr14:69701400-69705800	Strong transcription	Ovary	ovary
50	chr14:69701400-69706000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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