Variant report

Variant	rs3742900
Chromosome Location	chr14:69707355-69707356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69615656..69619747-chr14:69707327..69710862,3	MCF-7	breast:
2	chr14:69696301..69698184-chr14:69705345..69707373,2	K562	blood:
3	chr14:69699129..69701424-chr14:69705901..69707505,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10132533	0.88[CHB][hapmap]
rs10139153	0.83[ASN][1000 genomes]
rs10139274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10498528	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs11158795	0.88[CHB][hapmap]
rs11158796	0.83[ASN][1000 genomes]
rs11158798	0.88[CHB][hapmap]
rs12879406	0.88[CHB][hapmap]
rs12886715	1.00[CHB][hapmap]
rs12889849	0.88[CHB][hapmap]
rs17106693	1.00[AMR][1000 genomes]
rs17106717	1.00[AMR][1000 genomes]
rs17106754	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap]
rs17106800	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17106817	0.86[CHB][hapmap]
rs1890944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3211166	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs3742899	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4143922	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs4243633	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4899279	1.00[AMR][1000 genomes]
rs4899283	1.00[AMR][1000 genomes]
rs4899290	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4902691	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs4902698	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4902704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs56788993	1.00[AMR][1000 genomes]
rs57422627	1.00[AMR][1000 genomes]
rs57674546	1.00[AMR][1000 genomes]
rs6573869	0.88[CHB][hapmap]
rs7151331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7494646	1.00[AMR][1000 genomes]
rs8007859	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8008735	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap]
rs8008829	1.00[CHB][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
2	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:69678400-69709200	Weak transcription	NHDF-Ad	bronchial
4	chr14:69678600-69709200	Weak transcription	A549	lung
5	chr14:69688600-69707400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:69692800-69708400	Weak transcription	Stomach Mucosa	stomach
7	chr14:69694000-69711200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
9	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
10	chr14:69695200-69708800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:69695600-69708800	Strong transcription	Liver	Liver
12	chr14:69696400-69708800	Strong transcription	Stomach Smooth Muscle	stomach
13	chr14:69696600-69709600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr14:69698600-69709200	Strong transcription	Brain Angular Gyrus	brain
15	chr14:69698800-69707800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:69698800-69708000	Strong transcription	Fetal Intestine Large	intestine
17	chr14:69698800-69709200	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr14:69700200-69709400	Strong transcription	Fetal Stomach	stomach
19	chr14:69700600-69709400	Strong transcription	Fetal Muscle Leg	muscle
20	chr14:69700800-69708600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:69700800-69708600	Strong transcription	Adipose Nuclei	Adipose
22	chr14:69700800-69709000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:69701000-69708600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:69701000-69708600	Strong transcription	Primary T cells from cord blood	blood
25	chr14:69701000-69709400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:69701000-69709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:69701200-69708000	Strong transcription	Lung	lung
28	chr14:69701200-69708800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr14:69701200-69709200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:69701200-69709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:69701400-69707800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:69701400-69707800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr14:69701400-69707800	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr14:69701400-69708000	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr14:69701400-69708000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:69701400-69708000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:69701400-69708200	Strong transcription	Colon Smooth Muscle	Colon
38	chr14:69701400-69708400	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:69701400-69708400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr14:69701400-69708600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:69701400-69708600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:69701400-69708600	Strong transcription	Brain Cingulate Gyrus	brain
43	chr14:69701400-69708800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:69701400-69709200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:69701400-69709200	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr14:69701400-69709200	Strong transcription	Brain Germinal Matrix	brain
47	chr14:69701400-69709200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr14:69701400-69709200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr14:69701400-69709400	Strong transcription	Esophagus	oesophagus
50	chr14:69701600-69707400	Strong transcription	Placenta	Placenta

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