Variant report

Variant	rs12889849
Chromosome Location	chr14:69693119-69693120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69691034..69693480-chr14:69702340..69704031,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10083451	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs10130013	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10132533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10135102	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10139274	0.90[CHB][hapmap]
rs10139873	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs10143302	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10145565	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10146339	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10147119	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10147369	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10148614	0.90[CHB][hapmap]
rs10149232	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10498528	0.90[CHB][hapmap]
rs11158782	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs11158787	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11158790	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs11158792	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11158795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147481	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs11622889	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11625374	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628126	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12431706	0.86[AMR][1000 genomes]
rs12431846	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12434764	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12434775	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12435594	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12437418	0.80[EUR][1000 genomes]
rs12589028	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs1275407	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs1275415	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12879406	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12886715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12890560	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106754	0.88[CHB][hapmap]
rs17106817	0.89[CHB][hapmap]
rs1890944	0.90[CHB][hapmap]
rs1892297	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1914004	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2001998	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs2056153	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2139540	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2139541	0.86[AMR][1000 genomes]
rs2331918	0.84[CEU][hapmap]
rs2331919	0.80[EUR][1000 genomes]
rs2331956	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28613298	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs3211166	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34999390	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742899	0.88[CHB][hapmap]
rs3742900	0.88[CHB][hapmap]
rs4143922	0.88[CHB][hapmap]
rs4243633	0.88[CHB][hapmap]
rs4899280	0.92[CEU][hapmap]
rs4899290	0.90[CHB][hapmap]
rs4902691	0.90[CHB][hapmap]
rs4902698	0.90[CHB][hapmap]
rs4902704	0.90[CHB][hapmap]
rs56008928	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980267	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980270	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61980284	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573869	0.89[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6573872	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71423349	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7148045	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7151331	0.90[CHB][hapmap]
rs7160629	0.89[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs8005658	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8007859	0.88[CHB][hapmap]
rs8008184	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs8008735	0.88[CHB][hapmap]
rs8008829	0.90[CHB][hapmap]
rs9323524	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12889849	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:69658800-69702400	Weak transcription	Gastric	stomach
3	chr14:69659000-69695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:69659000-69695400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
6	chr14:69659200-69695600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
8	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
9	chr14:69659400-69695600	Weak transcription	HSMM	muscle
10	chr14:69659600-69695200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:69659600-69695400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:69659800-69695600	Weak transcription	Lung	lung
13	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
14	chr14:69660800-69695400	Weak transcription	Thymus	Thymus
15	chr14:69663400-69696000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:69664400-69693200	Weak transcription	Psoas Muscle	Psoas
17	chr14:69664400-69701400	Weak transcription	Small Intestine	intestine
18	chr14:69670600-69698000	Weak transcription	Fetal Thymus	thymus
19	chr14:69673200-69701600	Weak transcription	HMEC	breast
20	chr14:69673400-69696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:69673600-69695400	Weak transcription	Ovary	ovary
22	chr14:69673600-69701400	Weak transcription	Esophagus	oesophagus
23	chr14:69674400-69696000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr14:69674800-69696400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr14:69674800-69702800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:69675200-69695400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr14:69675200-69701400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:69675200-69702800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:69675800-69701400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr14:69676200-69703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:69676600-69695400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr14:69676800-69698800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:69677000-69695600	Weak transcription	Brain Angular Gyrus	brain
34	chr14:69677000-69701400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:69677200-69695400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:69677200-69702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr14:69677400-69695400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:69677400-69696200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:69677600-69693800	Weak transcription	Right Ventricle	heart
41	chr14:69677600-69695200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:69677600-69695600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:69678400-69695400	Weak transcription	Brain Substantia Nigra	brain
44	chr14:69678400-69702200	Weak transcription	Fetal Brain Male	brain
45	chr14:69678400-69709200	Weak transcription	NHDF-Ad	bronchial
46	chr14:69678600-69695600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:69678600-69703000	Weak transcription	NHEK	skin
48	chr14:69678600-69709200	Weak transcription	A549	lung
49	chr14:69679600-69695400	Weak transcription	Fetal Lung	lung
50	chr14:69679800-69698200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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