Variant report

Variant	rs17106817
Chromosome Location	chr14:69716957-69716958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69714927..69717262-chr14:69835905..69837953,2	MCF-7	breast:
2	chr14:69712401..69714746-chr14:69715640..69718165,2	MCF-7	breast:
3	chr14:69716336..69718485-chr14:69728021..69730750,2	MCF-7	breast:
4	chr14:69716596..69719427-chr14:69725434..69727636,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258520	Chromatin interaction
ENSG00000100626	Chromatin interaction

rs_ID	r²[population]
rs10132533	0.89[CHB][hapmap]
rs10139274	0.89[CHB][hapmap]
rs10148349	0.85[CEU][hapmap]
rs1043254	0.86[CEU][hapmap]
rs10498528	0.89[CHB][hapmap]
rs11158795	0.86[CHB][hapmap]
rs11158798	0.89[CHB][hapmap]
rs12879406	0.89[CHB][hapmap]
rs12886715	0.89[CHB][hapmap]
rs12889849	0.89[CHB][hapmap]
rs17106754	0.86[CHB][hapmap]
rs1890944	0.89[CHB][hapmap]
rs3211166	0.86[CHB][hapmap]
rs3742899	0.86[CHB][hapmap]
rs3742900	0.86[CHB][hapmap]
rs4143922	0.86[CHB][hapmap]
rs4243633	0.86[CHB][hapmap]
rs4899290	0.89[CHB][hapmap]
rs4902691	0.89[CHB][hapmap]
rs4902698	0.89[CHB][hapmap]
rs4902704	0.89[CHB][hapmap]
rs67088635	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151331	0.89[CHB][hapmap]
rs8007859	0.86[CHB][hapmap]
rs8008735	0.86[CHB][hapmap]
rs8008829	0.89[CHB][hapmap]

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
2	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
3	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
4	chr14:69703400-69719600	Weak transcription	HMEC	breast
5	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:69706000-69722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:69707800-69717000	Weak transcription	Right Ventricle	heart
8	chr14:69707800-69717200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:69707800-69717400	Weak transcription	Colonic Mucosa	Colon
10	chr14:69708000-69717200	Weak transcription	Lung	lung
11	chr14:69708200-69717200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:69708400-69721800	Weak transcription	Fetal Brain Female	brain
13	chr14:69708400-69725800	Weak transcription	Pancreas	Pancrea
14	chr14:69708600-69722000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:69708800-69717200	Weak transcription	Brain Hippocampus Middle	brain
16	chr14:69708800-69718400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:69708800-69719600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:69708800-69723000	Weak transcription	Fetal Intestine Small	intestine
19	chr14:69709200-69722800	Weak transcription	Brain Germinal Matrix	brain
20	chr14:69709400-69722600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:69709400-69725800	Weak transcription	Brain Anterior Caudate	brain
22	chr14:69709400-69726400	Weak transcription	Gastric	stomach
23	chr14:69709800-69725400	Weak transcription	Brain Angular Gyrus	brain
24	chr14:69711000-69717000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:69713200-69717600	Enhancers	Fetal Muscle Leg	muscle
26	chr14:69714400-69718400	Weak transcription	Fetal Stomach	stomach
27	chr14:69714800-69719600	Weak transcription	HSMM	muscle
28	chr14:69714800-69721200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:69714800-69726200	Weak transcription	Aorta	Aorta
30	chr14:69715400-69717200	Weak transcription	Adipose Nuclei	Adipose
31	chr14:69715600-69718200	Weak transcription	NHLF	lung
32	chr14:69716200-69717200	Enhancers	HSMMtube	muscle
33	chr14:69716600-69717000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:69716600-69717400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:69716600-69717400	Enhancers	Fetal Muscle Trunk	muscle
36	chr14:69716600-69717400	Enhancers	Left Ventricle	heart
37	chr14:69716600-69717600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr14:69716600-69724600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:69716800-69717000	Enhancers	Stomach Smooth Muscle	stomach
40	chr14:69716800-69717400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr14:69716800-69722000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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