Variant report

Variant	rs12886715
Chromosome Location	chr14:69696336-69696337
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69686413..69688261-chr14:69695116..69697410,2	MCF-7	breast:
2	chr14:69695336..69697000-chr14:69948742..69951504,2	MCF-7	breast:
3	chr14:69658198..69659814-chr14:69694580..69696739,2	K562	blood:
4	chr14:69696301..69698184-chr14:69705345..69707373,2	K562	blood:

Variant related genes	Relation type
ENSG00000175985	Chromatin interaction
ENSG00000258957	Chromatin interaction
ENSG00000081177	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10083451	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs10130013	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10131077	0.80[EUR][1000 genomes]
rs10132533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10135102	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10139274	1.00[CHB][hapmap]
rs10139873	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs10141040	0.80[EUR][1000 genomes]
rs10143302	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10145565	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs10146339	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10147119	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10147369	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10148614	0.88[CHB][hapmap]
rs10149232	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10498528	1.00[CHB][hapmap]
rs11158782	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11158787	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11158790	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11158792	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11158795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147481	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs11622889	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11625374	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628126	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12431706	0.87[AMR][1000 genomes]
rs12431846	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12434764	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12434775	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12435594	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12437418	0.81[EUR][1000 genomes]
rs12589028	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1275407	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1275415	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12879406	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12889849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12890560	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106754	1.00[CHB][hapmap]
rs17106817	0.89[CHB][hapmap]
rs1890944	1.00[CHB][hapmap]
rs1892297	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1914004	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2001998	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2056153	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2139540	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2139541	0.87[AMR][1000 genomes]
rs2331918	0.83[CEU][hapmap]
rs2331919	0.81[EUR][1000 genomes]
rs2331956	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28613298	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs3211166	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34999390	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742899	1.00[CHB][hapmap]
rs3742900	1.00[CHB][hapmap]
rs4143922	1.00[CHB][hapmap]
rs4243633	1.00[CHB][hapmap]
rs4899280	0.91[CEU][hapmap]
rs4899290	1.00[CHB][hapmap]
rs4902691	1.00[CHB][hapmap]
rs4902698	1.00[CHB][hapmap]
rs4902704	1.00[CHB][hapmap]
rs56008928	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980267	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980270	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61980284	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573869	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs6573872	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71423349	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7148045	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7151331	1.00[CHB][hapmap]
rs7160629	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs8005658	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8007859	1.00[CHB][hapmap]
rs8008184	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs8008735	1.00[CHB][hapmap]
rs8008829	1.00[CHB][hapmap]
rs9323522	0.80[EUR][1000 genomes]
rs9323524	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12886715	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69702400	Weak transcription	Gastric	stomach
2	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
3	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
4	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
5	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
6	chr14:69664400-69701400	Weak transcription	Small Intestine	intestine
7	chr14:69670600-69698000	Weak transcription	Fetal Thymus	thymus
8	chr14:69673200-69701600	Weak transcription	HMEC	breast
9	chr14:69673400-69696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:69673600-69701400	Weak transcription	Esophagus	oesophagus
11	chr14:69674800-69696400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:69674800-69702800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:69675200-69701400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:69675200-69702800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:69675800-69701400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr14:69676200-69703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:69676800-69698800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr14:69677000-69701400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr14:69677200-69702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:69678400-69702200	Weak transcription	Fetal Brain Male	brain
22	chr14:69678400-69709200	Weak transcription	NHDF-Ad	bronchial
23	chr14:69678600-69703000	Weak transcription	NHEK	skin
24	chr14:69678600-69709200	Weak transcription	A549	lung
25	chr14:69679800-69698200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:69680000-69696800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:69680000-69702800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:69680600-69696400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr14:69681200-69702800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr14:69688000-69701400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:69688600-69707400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr14:69689000-69702800	Weak transcription	HepG2	liver
33	chr14:69689600-69703200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr14:69690000-69701400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr14:69690200-69703000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr14:69690600-69697000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr14:69690600-69703000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:69691000-69698200	Weak transcription	Aorta	Aorta
39	chr14:69691200-69696800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr14:69691200-69696800	Weak transcription	Brain Germinal Matrix	brain
41	chr14:69691200-69701600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:69691400-69702800	Weak transcription	Spleen	Spleen
43	chr14:69691800-69701600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr14:69692200-69702800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr14:69692800-69708400	Weak transcription	Stomach Mucosa	stomach
46	chr14:69693200-69701800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr14:69693400-69703000	Weak transcription	Psoas Muscle	Psoas
48	chr14:69693800-69697200	Weak transcription	NH-A	brain
49	chr14:69693800-69701400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr14:69693800-69704600	Weak transcription	HSMMtube	muscle

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