Variant report

Variant	rs2331956
Chromosome Location	chr14:69697881-69697882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69690263..69692665-chr14:69696719..69699717,2	MCF-7	breast:
2	chr14:69697379..69699453-chr14:69702660..69704964,2	K562	blood:
3	chr14:69618478..69620510-chr14:69696515..69698408,2	MCF-7	breast:
4	chr14:69618421..69622920-chr14:69696424..69702104,8	MCF-7	breast:
5	chr14:69696301..69698184-chr14:69705345..69707373,2	K562	blood:

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10132533	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10135102	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10147119	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10149232	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11158790	0.80[AMR][1000 genomes]
rs11158792	0.83[AFR][1000 genomes]
rs11158795	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158798	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11622889	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11625374	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12431706	0.86[AMR][1000 genomes]
rs12434764	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12879406	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12886715	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12889849	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12890560	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2139540	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2139541	0.86[AMR][1000 genomes]
rs3211166	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34999390	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56008928	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61980267	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61980270	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980284	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573872	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs71423349	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7148045	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8005658	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2331956	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69702400	Weak transcription	Gastric	stomach
2	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
3	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
4	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
5	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
6	chr14:69664400-69701400	Weak transcription	Small Intestine	intestine
7	chr14:69670600-69698000	Weak transcription	Fetal Thymus	thymus
8	chr14:69673200-69701600	Weak transcription	HMEC	breast
9	chr14:69673600-69701400	Weak transcription	Esophagus	oesophagus
10	chr14:69674800-69702800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:69675200-69701400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:69675200-69702800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:69675800-69701400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:69676200-69703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:69676800-69698800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:69677000-69701400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr14:69677200-69702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:69678400-69702200	Weak transcription	Fetal Brain Male	brain
20	chr14:69678400-69709200	Weak transcription	NHDF-Ad	bronchial
21	chr14:69678600-69703000	Weak transcription	NHEK	skin
22	chr14:69678600-69709200	Weak transcription	A549	lung
23	chr14:69679800-69698200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:69680000-69702800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:69681200-69702800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:69688000-69701400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:69688600-69707400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:69689000-69702800	Weak transcription	HepG2	liver
29	chr14:69689600-69703200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr14:69690000-69701400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr14:69690200-69703000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr14:69690600-69703000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:69691000-69698200	Weak transcription	Aorta	Aorta
34	chr14:69691200-69701600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr14:69691400-69702800	Weak transcription	Spleen	Spleen
36	chr14:69691800-69701600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:69692200-69702800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr14:69692800-69708400	Weak transcription	Stomach Mucosa	stomach
39	chr14:69693200-69701800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr14:69693400-69703000	Weak transcription	Psoas Muscle	Psoas
41	chr14:69693800-69701400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:69693800-69704600	Weak transcription	HSMMtube	muscle
43	chr14:69694000-69701400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:69694000-69701600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr14:69694000-69702800	Weak transcription	Right Ventricle	heart
46	chr14:69694000-69711200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
48	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
49	chr14:69694200-69699000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:69694400-69698600	Strong transcription	Fetal Stomach	stomach

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