Variant report

Variant	rs8005658
Chromosome Location	chr14:69607003-69607004
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69604920..69607062-chr14:69618285..69620612,3	MCF-7	breast:
2	chr14:69606804..69609751-chr14:69611756..69613972,2	MCF-7	breast:
3	chr14:69600850..69603375-chr14:69604696..69609142,5	K562	blood:
4	chr14:69605333..69607986-chr14:69664752..69666592,2	K562	blood:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10083451	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10130013	0.81[AMR][1000 genomes]
rs10131077	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10132533	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10134578	0.82[AMR][1000 genomes]
rs10135102	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10139873	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10141040	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10143302	0.82[AMR][1000 genomes]
rs10143769	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10145565	0.82[AMR][1000 genomes]
rs10146339	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10147119	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10147369	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10148614	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10149232	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11158782	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11158787	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11158790	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11158792	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158795	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11158798	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11622889	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11625374	0.84[AMR][1000 genomes]
rs12431846	0.81[AFR][1000 genomes]
rs12434764	0.86[AFR][1000 genomes]
rs12434775	0.81[AFR][1000 genomes]
rs12435594	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12437418	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12589028	0.82[AMR][1000 genomes]
rs12879406	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12886715	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12889849	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12890560	0.85[AMR][1000 genomes]
rs2001998	0.82[AMR][1000 genomes]
rs2056153	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2139540	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2331919	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2331956	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28613298	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3211166	0.83[AFR][1000 genomes]
rs34999390	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56008928	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61980267	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61980270	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61980284	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6573869	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6573872	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71423349	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7148045	0.86[AFR][1000 genomes]
rs7160629	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8008184	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9323522	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9323524	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8005658	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69585600-69609200	Weak transcription	Fetal Kidney	kidney
3	chr14:69596600-69609600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:69596600-69609600	Weak transcription	Dnd41	blood
5	chr14:69596600-69612800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr14:69596600-69613800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:69596600-69614800	Weak transcription	Fetal Brain Female	brain
8	chr14:69596600-69614800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr14:69596600-69615000	Weak transcription	Thymus	Thymus
10	chr14:69596600-69615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:69596600-69615400	Weak transcription	Placenta	Placenta
12	chr14:69596600-69616400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:69596600-69617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:69596800-69609200	Weak transcription	HepG2	liver
15	chr14:69597600-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:69600000-69617000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:69600200-69611400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:69600400-69609400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:69600400-69611200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:69600400-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:69600400-69616800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:69600400-69616800	Weak transcription	Fetal Brain Male	brain
23	chr14:69600600-69609400	Weak transcription	Stomach Mucosa	stomach
24	chr14:69600600-69617800	Weak transcription	Aorta	Aorta
25	chr14:69601000-69608200	Weak transcription	Gastric	stomach
26	chr14:69601000-69609400	Weak transcription	K562	blood
27	chr14:69601000-69613200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr14:69601000-69615600	Weak transcription	HMEC	breast
29	chr14:69601000-69615800	Weak transcription	A549	lung
30	chr14:69601000-69616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:69601000-69617000	Weak transcription	Ovary	ovary
32	chr14:69601000-69618000	Weak transcription	Esophagus	oesophagus
33	chr14:69601200-69609200	Weak transcription	Liver	Liver
34	chr14:69601200-69609600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:69601400-69616000	Weak transcription	Hela-S3	cervix
36	chr14:69602200-69608400	Weak transcription	Primary B cells from cord blood	blood
37	chr14:69602600-69608200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:69604000-69607400	Strong transcription	Primary T cells from cord blood	blood
39	chr14:69604600-69607600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr14:69604800-69611400	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:69604800-69611800	Weak transcription	Pancreas	Pancrea
42	chr14:69604800-69616800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr14:69605000-69616600	Weak transcription	Brain Germinal Matrix	brain
44	chr14:69605200-69614800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:69605200-69616800	Weak transcription	Small Intestine	intestine
46	chr14:69605200-69617400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr14:69605400-69609000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr14:69605400-69615000	Weak transcription	HSMMtube	muscle
49	chr14:69605400-69617000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr14:69605400-69617400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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