Variant report

Variant	rs10148614
Chromosome Location	chr14:69534982-69534983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69446437..69448234-chr14:69533386..69535610,2	MCF-7	breast:
2	chr14:69527663..69529780-chr14:69532425..69536025,3	K562	blood:

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10083451	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10130013	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10131077	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10132533	0.90[CHB][hapmap]
rs10134578	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10135102	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10135127	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10135643	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10135971	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10139873	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10141040	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10143302	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10145565	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146339	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10146649	0.94[EUR][1000 genomes]
rs10147119	0.85[AFR][1000 genomes]
rs10147369	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10149232	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10151376	0.91[EUR][1000 genomes]
rs11158780	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11158782	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158787	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158790	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158792	0.85[AFR][1000 genomes]
rs11158795	0.80[CEU][hapmap];0.88[CHB][hapmap]
rs11158798	0.90[CHB][hapmap]
rs1147481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11622889	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11628126	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12323738	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12431846	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12432645	0.82[CHB][hapmap]
rs12434775	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12435594	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12437418	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12586650	0.89[CHB][hapmap]
rs12587583	0.89[CHB][hapmap]
rs12589028	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1275415	1.00[CHB][hapmap]
rs12879406	0.90[CEU][hapmap];0.90[CHB][hapmap];0.85[AFR][1000 genomes]
rs12881049	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12885977	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12886715	0.88[CHB][hapmap]
rs12889849	0.90[CHB][hapmap]
rs12891103	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1892296	0.93[EUR][1000 genomes]
rs1892297	1.00[CHB][hapmap]
rs1914004	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1973677	0.82[EUR][1000 genomes]
rs2001998	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056153	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2139540	0.85[AFR][1000 genomes]
rs2331918	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs2331919	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28613298	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3211166	0.88[CHB][hapmap]
rs35538328	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4338726	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4899280	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61980267	0.85[AFR][1000 genomes]
rs6573869	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573872	0.80[AMR][1000 genomes]
rs7144307	0.80[CEU][hapmap]
rs7160629	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005658	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8008184	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8017103	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9323522	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9323524	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10148614	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69516200-69541800	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
3	chr14:69518800-69537000	Strong transcription	Fetal Muscle Trunk	muscle
4	chr14:69519000-69537000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:69519000-69537200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:69519200-69544600	Weak transcription	Stomach Mucosa	stomach
7	chr14:69519600-69546000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:69521000-69540600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:69522200-69539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:69522400-69556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:69522400-69564800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:69522600-69545600	Weak transcription	Pancreas	Pancrea
13	chr14:69523400-69535600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:69523400-69535800	Weak transcription	Aorta	Aorta
15	chr14:69523600-69535400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:69523600-69545600	Weak transcription	Right Ventricle	heart
17	chr14:69523600-69550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:69523600-69553400	Weak transcription	Brain Angular Gyrus	brain
19	chr14:69523600-69556400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:69523800-69535800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:69524000-69557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:69524800-69556600	Weak transcription	Fetal Brain Male	brain
23	chr14:69526800-69545600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:69527000-69535600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:69527000-69545800	Weak transcription	Psoas Muscle	Psoas
26	chr14:69527000-69558200	Weak transcription	Esophagus	oesophagus
27	chr14:69527200-69535000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:69527200-69535400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr14:69527200-69535600	Weak transcription	HUVEC	blood vessel
30	chr14:69527400-69535600	Weak transcription	NHLF	lung
31	chr14:69528000-69536200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:69528200-69539600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr14:69528600-69535600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:69528600-69535800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:69528600-69539200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:69528600-69540200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:69528600-69545400	Weak transcription	Gastric	stomach
38	chr14:69528600-69547000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr14:69528600-69547800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:69528600-69550600	Weak transcription	Spleen	Spleen
41	chr14:69528600-69560200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr14:69528800-69536000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:69528800-69550600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr14:69529200-69535400	Weak transcription	HMEC	breast
45	chr14:69529200-69535800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr14:69529200-69538600	Weak transcription	Brain Hippocampus Middle	brain
47	chr14:69529200-69539200	Weak transcription	Lung	lung
48	chr14:69529200-69539400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr14:69529200-69539400	Weak transcription	Brain Anterior Caudate	brain
50	chr14:69529200-69539400	Weak transcription	Brain Substantia Nigra	brain

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