Variant report

Variant	rs10135127
Chromosome Location	chr14:69492790-69492791
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10130013	0.90[EUR][1000 genomes]
rs10134578	0.91[EUR][1000 genomes]
rs10135643	0.82[EUR][1000 genomes]
rs10135971	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10143302	0.91[EUR][1000 genomes]
rs10145565	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10146649	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10148614	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10151376	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11158780	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158782	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11158787	0.90[EUR][1000 genomes]
rs12323738	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12431846	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12434775	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12435594	0.90[EUR][1000 genomes]
rs12589028	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12881049	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12885977	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12891103	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1892296	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1914004	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1973677	0.85[EUR][1000 genomes]
rs2001998	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2331918	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35538328	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4338726	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4899280	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61981619	0.82[AMR][1000 genomes]
rs7151797	0.84[AMR][1000 genomes]
rs7160629	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs761899	0.83[AMR][1000 genomes]
rs8017103	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10135127	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69486000-69503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links