Variant report

Variant	rs12885977
Chromosome Location	chr14:69495375-69495376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69488586..69490488-chr14:69494465..69496830,2	K562	blood:
2	chr14:69483409..69485668-chr14:69495105..69496643,2	MCF-7	breast:
3	chr14:69492929..69495607-chr14:69501759..69504340,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242293	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10130013	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10134578	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10135127	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10135643	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10135971	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10138663	0.91[AFR][1000 genomes]
rs10143302	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10145565	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10146649	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10148614	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10151376	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158780	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11158782	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158787	0.90[EUR][1000 genomes]
rs12323738	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12431846	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12434775	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12435594	0.90[EUR][1000 genomes]
rs12589028	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12881049	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12891103	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1892296	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1914004	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1973677	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2001998	0.87[EUR][1000 genomes]
rs2331918	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35538328	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4338726	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4509951	0.89[AFR][1000 genomes]
rs4899280	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7151797	0.86[AMR][1000 genomes]
rs7160629	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72718250	0.89[AFR][1000 genomes]
rs72718251	0.89[AFR][1000 genomes]
rs761899	0.83[AMR][1000 genomes]
rs8017103	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs910844	0.88[AFR][1000 genomes]
rs910845	0.91[AFR][1000 genomes]
rs910846	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12885977	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69486000-69503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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