Variant report

Variant	rs12437418
Chromosome Location	chr14:69566311-69566312
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69558940..69562138-chr14:69562200..69566674,5	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10083451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130013	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10131077	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10132533	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10134578	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10135102	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10135971	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10139873	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141040	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10143302	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10143769	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10145565	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10146339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10147119	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10147369	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10148614	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10149232	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158782	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158787	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11158790	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158792	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11158795	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11158798	0.81[EUR][1000 genomes]
rs1147481	0.94[ASN][1000 genomes]
rs11622889	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11625374	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11628126	0.84[ASN][1000 genomes]
rs12431846	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12434764	0.82[AFR][1000 genomes]
rs12434775	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12435594	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12589028	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1275407	0.94[ASN][1000 genomes]
rs1275415	0.86[ASN][1000 genomes]
rs12879406	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12886715	0.81[EUR][1000 genomes]
rs12889849	0.80[EUR][1000 genomes]
rs12890560	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1892297	0.86[ASN][1000 genomes]
rs1914004	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2001998	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2056153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2139540	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2331919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28613298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34999390	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4899280	0.82[EUR][1000 genomes]
rs56008928	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61980267	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61980270	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980284	0.82[EUR][1000 genomes]
rs6573869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573872	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71423349	0.81[AMR][1000 genomes]
rs7148045	0.82[AFR][1000 genomes]
rs7160629	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8005658	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8008184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9323522	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9323524	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12437418	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69542600-69570600	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
3	chr14:69548200-69567400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr14:69550000-69568000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:69558600-69569600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:69558600-69570400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:69558600-69572000	Weak transcription	Brain Germinal Matrix	brain
8	chr14:69558600-69578600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr14:69558800-69567800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:69558800-69569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:69558800-69569600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:69558800-69570000	Weak transcription	Fetal Brain Female	brain
13	chr14:69558800-69572000	Weak transcription	Esophagus	oesophagus
14	chr14:69558800-69572000	Weak transcription	Spleen	Spleen
15	chr14:69558800-69581600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:69558800-69582000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
18	chr14:69559000-69569600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:69559000-69583800	Weak transcription	Colonic Mucosa	Colon
20	chr14:69559200-69567800	Weak transcription	Liver	Liver
21	chr14:69559200-69569400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:69560600-69575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:69561200-69567800	Weak transcription	Fetal Intestine Small	intestine
25	chr14:69561200-69568400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:69561200-69569600	Weak transcription	GM12878-XiMat	blood
27	chr14:69561200-69572000	Weak transcription	Gastric	stomach
28	chr14:69561200-69577200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr14:69561200-69581600	Weak transcription	Aorta	Aorta
30	chr14:69561200-69581600	Weak transcription	Lung	lung
31	chr14:69561200-69581600	Weak transcription	Pancreas	Pancrea
32	chr14:69561200-69581600	Weak transcription	Small Intestine	intestine
33	chr14:69561400-69567800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr14:69561400-69567800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:69561400-69567800	Weak transcription	NHEK	skin
36	chr14:69561400-69569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:69561400-69581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:69561600-69567800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:69561600-69567800	Weak transcription	Adipose Nuclei	Adipose
40	chr14:69561600-69567800	Weak transcription	NHDF-Ad	bronchial
41	chr14:69561600-69569600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr14:69561600-69572000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:69561600-69581600	Weak transcription	Brain Angular Gyrus	brain
44	chr14:69561600-69581600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr14:69561800-69567800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr14:69561800-69567800	Weak transcription	HMEC	breast
47	chr14:69561800-69568200	Weak transcription	HSMM	muscle
48	chr14:69561800-69570000	Weak transcription	Fetal Lung	lung
49	chr14:69561800-69572000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr14:69561800-69572000	Weak transcription	Left Ventricle	heart

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