Variant report

Variant	rs7148045
Chromosome Location	chr14:69699559-69699560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69694022..69696268-chr14:69699300..69702287,2	MCF-7	breast:
2	chr14:69690263..69692665-chr14:69696719..69699717,2	MCF-7	breast:
3	chr14:69618421..69622920-chr14:69696424..69702104,8	MCF-7	breast:
4	chr14:69699129..69701424-chr14:69705901..69707505,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction
ENSG00000081177	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10083451	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs10130013	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs10132533	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10135102	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10139873	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs10143302	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs10145565	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs10146339	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs10147119	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10147369	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs10149232	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11158782	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs11158787	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs11158790	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs11158792	0.89[AFR][1000 genomes]
rs11158795	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11158798	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147481	0.82[JPT][hapmap]
rs11622889	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes]
rs11625374	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11628126	1.00[JPT][hapmap]
rs12431706	0.91[AMR][1000 genomes]
rs12431846	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs12434764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12434775	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs12435594	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs12437418	0.82[AFR][1000 genomes]
rs12589028	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs1275407	0.82[JPT][hapmap]
rs1275415	1.00[JPT][hapmap]
rs12879406	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12886715	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12889849	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12890560	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1892297	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1914004	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2001998	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs2056153	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs2139540	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2139541	0.91[AMR][1000 genomes]
rs2331918	0.84[CEU][hapmap]
rs2331919	0.82[AFR][1000 genomes]
rs2331956	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28613298	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs3211166	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34999390	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899280	0.87[CEU][hapmap]
rs56008928	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61980267	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61980270	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61980284	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573869	0.88[CEU][hapmap];0.82[JPT][hapmap];0.82[AFR][1000 genomes]
rs6573872	0.82[ASN][1000 genomes]
rs71423349	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7160629	0.88[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs8005658	0.86[AFR][1000 genomes]
rs8008184	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs9323524	0.87[CEU][hapmap];0.82[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7148045	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69702400	Weak transcription	Gastric	stomach
2	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
3	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
4	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
5	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
6	chr14:69664400-69701400	Weak transcription	Small Intestine	intestine
7	chr14:69673200-69701600	Weak transcription	HMEC	breast
8	chr14:69673600-69701400	Weak transcription	Esophagus	oesophagus
9	chr14:69674800-69702800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:69675200-69701400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr14:69675200-69702800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:69675800-69701400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr14:69676200-69703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:69677000-69701400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr14:69677200-69702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:69678400-69702200	Weak transcription	Fetal Brain Male	brain
18	chr14:69678400-69709200	Weak transcription	NHDF-Ad	bronchial
19	chr14:69678600-69703000	Weak transcription	NHEK	skin
20	chr14:69678600-69709200	Weak transcription	A549	lung
21	chr14:69680000-69702800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:69681200-69702800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:69688000-69701400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:69688600-69707400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:69689000-69702800	Weak transcription	HepG2	liver
26	chr14:69689600-69703200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:69690000-69701400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:69690200-69703000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:69690600-69703000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:69691200-69701600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:69691400-69702800	Weak transcription	Spleen	Spleen
32	chr14:69691800-69701600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:69692200-69702800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:69692800-69708400	Weak transcription	Stomach Mucosa	stomach
35	chr14:69693200-69701800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr14:69693400-69703000	Weak transcription	Psoas Muscle	Psoas
37	chr14:69693800-69701400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:69693800-69704600	Weak transcription	HSMMtube	muscle
39	chr14:69694000-69701400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:69694000-69701600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr14:69694000-69702800	Weak transcription	Right Ventricle	heart
42	chr14:69694000-69711200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
44	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
45	chr14:69694400-69704600	Weak transcription	Osteobl	bone
46	chr14:69695000-69699800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr14:69695200-69699800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:69695200-69708800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr14:69695400-69699600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr14:69695400-69699600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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