Variant report

Variant	rs12431706
Chromosome Location	chr14:69716438-69716439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69713333..69716497-chr14:69822464..69825610,4	MCF-7	breast:
2	chr14:69714927..69717262-chr14:69835905..69837953,2	MCF-7	breast:
3	chr14:69712401..69714746-chr14:69715640..69718165,2	MCF-7	breast:
4	chr14:69716336..69718485-chr14:69728021..69730750,2	MCF-7	breast:

rs_ID	r²[population]
rs10083451	0.84[MEX][hapmap]
rs10130013	0.80[MEX][hapmap]
rs10132533	0.80[AMR][1000 genomes]
rs10139873	0.84[MEX][hapmap]
rs10140798	0.88[ASN][1000 genomes]
rs10143302	0.84[MEX][hapmap]
rs10145565	0.84[MEX][hapmap]
rs10147369	0.80[MEX][hapmap]
rs11158782	0.84[MEX][hapmap]
rs11158787	0.84[MEX][hapmap]
rs11158790	0.84[MEX][hapmap]
rs11158795	0.84[MEX][hapmap];0.80[AMR][1000 genomes]
rs11158798	0.86[AMR][1000 genomes]
rs11622889	0.84[MEX][hapmap]
rs11625374	0.84[AMR][1000 genomes]
rs12431846	0.84[MEX][hapmap]
rs12432645	0.82[CEU][hapmap]
rs12434764	0.91[AMR][1000 genomes]
rs12434775	0.84[MEX][hapmap]
rs12435594	0.84[MEX][hapmap]
rs12586650	0.82[CEU][hapmap];0.85[GIH][hapmap];1.00[MKK][hapmap]
rs12589028	0.84[MEX][hapmap]
rs12886715	0.87[AMR][1000 genomes]
rs12889849	0.86[AMR][1000 genomes]
rs12890560	0.85[AMR][1000 genomes]
rs12894822	0.82[CEU][hapmap];0.80[GIH][hapmap];1.00[MKK][hapmap]
rs2001998	0.84[MEX][hapmap]
rs2056153	0.84[MEX][hapmap]
rs2139541	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2331956	0.86[AMR][1000 genomes]
rs28613298	0.84[MEX][hapmap]
rs3211166	0.81[GIH][hapmap];0.92[MEX][hapmap];0.91[AMR][1000 genomes]
rs34999390	0.87[AMR][1000 genomes]
rs4899293	0.97[ASN][1000 genomes]
rs61980270	0.80[AMR][1000 genomes]
rs61980284	0.86[AMR][1000 genomes]
rs71423349	0.84[AMR][1000 genomes]
rs7148045	0.91[AMR][1000 genomes]
rs7157918	0.91[GIH][hapmap];0.82[TSI][hapmap]
rs8008184	0.84[MEX][hapmap]
rs9323524	0.80[MEX][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs12431706	WDR22	Cis_1M	lymphoblastoid	RTeQTL
rs12431706	SPTB	cis	cerebellum	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
2	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
3	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
4	chr14:69703400-69719600	Weak transcription	HMEC	breast
5	chr14:69704800-69716600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:69706000-69722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:69706200-69716600	Weak transcription	Brain Substantia Nigra	brain
9	chr14:69707800-69717000	Weak transcription	Right Ventricle	heart
10	chr14:69707800-69717200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:69707800-69717400	Weak transcription	Colonic Mucosa	Colon
12	chr14:69708000-69717200	Weak transcription	Lung	lung
13	chr14:69708200-69717200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:69708400-69721800	Weak transcription	Fetal Brain Female	brain
15	chr14:69708400-69725800	Weak transcription	Pancreas	Pancrea
16	chr14:69708600-69722000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:69708800-69716600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:69708800-69717200	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:69708800-69718400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:69708800-69719600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:69708800-69723000	Weak transcription	Fetal Intestine Small	intestine
22	chr14:69709200-69716600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr14:69709200-69722800	Weak transcription	Brain Germinal Matrix	brain
24	chr14:69709400-69716600	Weak transcription	Left Ventricle	heart
25	chr14:69709400-69722600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr14:69709400-69725800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:69709400-69726400	Weak transcription	Gastric	stomach
28	chr14:69709800-69716800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:69709800-69725400	Weak transcription	Brain Angular Gyrus	brain
30	chr14:69710000-69716600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:69711000-69717000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:69712400-69716600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:69713200-69717600	Enhancers	Fetal Muscle Leg	muscle
34	chr14:69714400-69718400	Weak transcription	Fetal Stomach	stomach
35	chr14:69714800-69716800	Enhancers	NHDF-Ad	bronchial
36	chr14:69714800-69719600	Weak transcription	HSMM	muscle
37	chr14:69714800-69721200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:69714800-69726200	Weak transcription	Aorta	Aorta
39	chr14:69715000-69716800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:69715200-69716600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:69715400-69717200	Weak transcription	Adipose Nuclei	Adipose
42	chr14:69715600-69718200	Weak transcription	NHLF	lung
43	chr14:69716200-69717200	Enhancers	HSMMtube	muscle
44	chr14:69716400-69716800	Enhancers	Psoas Muscle	Psoas

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