Variant report

Variant	rs9323524
Chromosome Location	chr14:69599570-69599571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69596677..69600515-chr14:69612349..69615880,3	K562	blood:
2	chr14:69594222..69597664-chr14:69598109..69600741,4	MCF-7	breast:
3	chr14:69599344..69600961-chr14:69601950..69604773,2	K562	blood:
4	chr14:69597111..69600267-chr14:69602814..69605697,3	K562	blood:
5	chr14:69598682..69601303-chr14:69622561..69624066,2	K562	blood:
6	chr14:69588946..69590991-chr14:69599196..69601563,2	MCF-7	breast:
7	chr14:69590965..69593609-chr14:69597562..69600294,2	MCF-7	breast:
8	chr14:69598156..69600124-chr14:69609675..69612059,2	MCF-7	breast:
9	chr14:69599088..69601551-chr14:69657133..69659821,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction
ENSG00000258957	Chromatin interaction
ENSG00000206768	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1007407	0.82[JPT][hapmap]
rs10083451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10130013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10131077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10132533	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10135102	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10139873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10141040	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs10143769	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10145565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs10146339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10147119	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10147369	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10148614	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10149232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs11158787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11158790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158792	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11158795	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11158798	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs1147481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11622889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11625374	0.80[AMR][1000 genomes]
rs11628126	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12431846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs12432970	0.85[JPT][hapmap]
rs12434478	0.85[JPT][hapmap]
rs12434775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs12435594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12437418	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12589028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs1275407	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1275415	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs12879406	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12886715	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs12889849	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12890560	0.81[AMR][1000 genomes]
rs17093668	0.85[JPT][hapmap]
rs1892297	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1914004	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2001998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs2012764	0.82[JPT][hapmap]
rs2024892	0.84[JPT][hapmap]
rs2024893	0.85[JPT][hapmap]
rs2056153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2139540	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2268968	0.85[JPT][hapmap]
rs2300875	0.82[JPT][hapmap]
rs2331918	0.96[CEU][hapmap]
rs2331919	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28613298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3211166	0.87[CEU][hapmap];0.89[CHB][hapmap];0.88[MEX][hapmap]
rs4899280	1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap]
rs4902682	0.85[JPT][hapmap]
rs56008928	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61980267	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61980270	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6573869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573872	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71423349	0.80[AMR][1000 genomes]
rs7144307	0.88[CEU][hapmap];0.83[MEX][hapmap]
rs7148045	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs7160629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs8005658	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8008184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8015876	0.85[JPT][hapmap]
rs9323522	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9323524	WDR22	Cis_1M	lymphoblastoid	RTeQTL
rs9323524	SPTB	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69585000-69599600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:69585000-69600000	Weak transcription	Right Ventricle	heart
4	chr14:69585000-69604400	Weak transcription	Spleen	Spleen
5	chr14:69585200-69600000	Weak transcription	Aorta	Aorta
6	chr14:69585200-69600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:69585200-69605800	Weak transcription	Lung	lung
8	chr14:69585600-69600200	Weak transcription	Esophagus	oesophagus
9	chr14:69585600-69609200	Weak transcription	Fetal Kidney	kidney
10	chr14:69588800-69599600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:69590600-69599800	Weak transcription	Gastric	stomach
12	chr14:69595400-69605400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:69595600-69600600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr14:69595600-69602000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:69595600-69602400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr14:69595800-69600400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:69595800-69600600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr14:69595800-69601200	Enhancers	Colon Smooth Muscle	Colon
19	chr14:69595800-69602600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr14:69596200-69601000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:69596400-69599800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:69596400-69601000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:69596400-69605200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:69596600-69599600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr14:69596600-69599600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:69596600-69599600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr14:69596600-69599600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:69596600-69599600	Weak transcription	Adipose Nuclei	Adipose
29	chr14:69596600-69599600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:69596600-69599800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:69596600-69599800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:69596600-69599800	Weak transcription	Brain Substantia Nigra	brain
33	chr14:69596600-69599800	Weak transcription	Small Intestine	intestine
34	chr14:69596600-69600000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr14:69596600-69600000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:69596600-69600000	Weak transcription	Fetal Brain Male	brain
37	chr14:69596600-69600000	Weak transcription	Pancreas	Pancrea
38	chr14:69596600-69600000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr14:69596600-69600200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:69596600-69603200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr14:69596600-69604200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr14:69596600-69604200	Weak transcription	Fetal Stomach	stomach
43	chr14:69596600-69604200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr14:69596600-69604600	Weak transcription	Fetal Muscle Leg	muscle
45	chr14:69596600-69604800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr14:69596600-69605000	Weak transcription	Fetal Intestine Large	intestine
47	chr14:69596600-69605600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:69596600-69605600	Weak transcription	Fetal Intestine Small	intestine
49	chr14:69596600-69605600	Weak transcription	Fetal Thymus	thymus
50	chr14:69596600-69609600	Weak transcription	Rectal Mucosa Donor 31	rectum

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