Variant report

Variant	rs61980267
Chromosome Location	chr14:69656923-69656924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:69656841-69657271	SK-N-MC	brain:	n/a	n/a
2	CEBPB	chr14:69656867-69657067	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:69614281..69621283-chr14:69656459..69660724,14	MCF-7	breast:
2	chr14:69655363..69656956-chr14:69660370..69661977,2	K562	blood:
3	chr14:69618275..69624022-chr14:69655650..69660294,14	MCF-7	breast:

Variant related genes	Relation type
EXD2	TF binding region
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10083451	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10130013	0.80[AMR][1000 genomes]
rs10131077	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10132533	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10135102	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10139873	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10141040	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10143769	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10146339	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10147119	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10147369	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10148614	0.85[AFR][1000 genomes]
rs10149232	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11158782	0.85[AFR][1000 genomes]
rs11158787	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11158790	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11158792	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11158795	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158798	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11622889	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11625374	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12431846	0.85[AFR][1000 genomes]
rs12434764	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12434775	0.85[AFR][1000 genomes]
rs12435594	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12437418	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12879406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12886715	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12889849	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12890560	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2056153	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2139540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331919	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2331956	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28613298	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3211166	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34999390	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56008928	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980270	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61980284	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573869	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6573872	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71423349	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7148045	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7160629	0.85[AFR][1000 genomes]
rs8005658	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8008184	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9323522	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9323524	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61980267	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69650800-69657600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr14:69651200-69657200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:69651200-69657400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:69651200-69657800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:69651600-69657000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:69651600-69657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:69656000-69657800	Weak transcription	Right Atrium	heart
8	chr14:69656800-69657000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr14:69656800-69657600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:69656800-69658000	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links